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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [588 aa] | INTEGRIN ALPHA-V :ITAV_HUMAN | |
2 | b | JA 1 (C) | non-polymer(CA) | CALCIUM ION | 468D 470D(N) 472D 474E(Y) 476E(D) (identity: 40.0 %/32.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4um8_C_1 identity=32.1% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 4um8_C_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSSEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSSS EEE-EEETT EEE TT EEE EE: ExpBur :ebbbbbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact : b b b b b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** ** : 4um8_C_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESSS SSS EEEEEETT SGGG EEEEE B SSSB SS SEEEE ------- SSS TTS: ExpBur :bbbbbeeebebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbe: queryA 584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679 :* * * * * *** * *** * ** * * * * * * * *: 4um8_C_1 407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKXXG: 506 SecStr :EEEEEE SS SSS EEEEEEGGGTEEEEE B EEEE EEEEE SEE TT SB TTSS B EEEEEEEE EEE SS SEEEEEEEEEET -- : ExpBur :bbbbebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebeeebebebebebbeee--e: queryA 680:HRTRRRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 4um8_C_1 507:--AIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563 SecStr :-- EEESSS SSEEEEEEEEEBTS EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :--eeebbbbbeeeebebeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |