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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [589 aa] | Integrin alpha-5 :ITA5_HUMAN | |
2 | b | FA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 413S 437Q(N) 443G(S) 444H(D) 448V(L) (identity: 20.0 %/32.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3vi3_C_1 identity=32.1% |
queryA 353:GISADLSR-GHAVVGAVGAKDWAGGFLDLKADLQDDTF--------IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAPRYQ-HMGRVLLFQ: 437 :* ** * * * * * * * * **** * * * * * * * : 3vi3_C_1 167:GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILN: 266 SecStr :TSEEEE TTS EEEEETTHHHHTBEEEEE HHHHHHH TTSS TT EE GGG S BTSSEEEE SSSSS EEEEEETT SSSS EEEEE : ExpBur :bebbbbbeebbbbbbbbbbbeebbbbbbbbbebbeebbeeeebeeebeebbebeeeeeeeeebebbbbbbbbbbeeeeebbbbbbbbebeeeebebbbbe: Contact : b b queryA 438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDI: 531 : * * * **** ** ** ** **** * *** * * * * **** * * * : 3vi3_C_1 267:----GSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLL-VGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDL: 361 SecStr :----TTT EEEEEE SSTTS SSSEEEEE SSSSSS EEE-EEETT EEE TT EEE EEEEE EETTEE SS SEEEE STT GGGEEEEEE T: ExpBur :----beebeeeeebebeeeebbbbebbbbbbbbeeeeebbb-bbbbebeeebeeeeebbbbbbbbbbbeeebbeeeeeeebebeeeebebbbbbbebbbb: Contact : bb b queryA 532:NGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI-QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFS: 625 : ** *** *** ** * * * *** *** * ** * ** * * * ** * ** * : 3vi3_C_1 362:DQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIF: 461 SecStr :T SSS EEEEEETT STTS EEEEE TTSS SS SEEE SS SS TTSEEEEEE SSSSS EEEEEEGGGTEEEEE B EE EE EES: ExpBur :beeeeebbbbbbbebbeeebbbbbbbbbbeebbeeeeebebebeeeeeeeebebbebbbbeeebbebebbbbbbbbbbbbebbbbbbebbbebebebeee: queryA 626:PAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVAN---LTYTLQLDGHR---TRRRGLFPGGRHE-LRRNIAVTTSM--SCTDFSFHF--: 714 :** * * * * * * ** * **** * ** * * * : 3vi3_C_1 462:PAMFNPEERSC--SLEGNPVACINLSFCLNAS-------GKHVADSIGFTVELQLDWQKQXXXXXRALFLASRQATLTQTLLIQNGAREDCREMKIYLRN: 552 SecStr : TT S-- SSSS EEEEEEEEE ------- SS SSEEEEEEEE S ----- EEETTTT SEEEEEEEE SSSS EEEEEEEEE : ExpBur :eeebeeeeeeb--ebeeeebbbbebbbbbebe-------beeebeebbbebebebeeeee-----ebbbeeeeebeeeeebebeeeeeeeeeebebbeee: queryA 715:PVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSET: 762 : *** ***** * * *** ** : 3vi3_C_1 553:EXXXXXXLSPIHIALNFSL--DPQAPVDSHG--------LRPALHYQS: 590 SecStr : ------ B EEEEEE-- TTS SSS-------- EE TT : ExpBur :e------eeebebbbbbeb--beeeeebeee--------bebbebeee: |