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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | C 2 (C) | polymer(polypeptide(L)) [882 aa] | Integrin alpha-X :ITAX_HUMAN | |
2 | b | D 2 (D) | polymer(polypeptide(L)) [673 aa] | Integrin beta-2 :ITB2_HUMAN | 47Y(D) 62G(Q) 97M(L) 114G(T) 116S(H) 120D(G) 121Q(R) 122N 123T(M) 125L 349L(M) 351S(Q) 354I(F) 401A(D) 403Y 406Y 426R 429H 455Q 456I 457G 459Y 484L(H) 486Y 490R 502L(R) 503G(R) 507V(D) 518L(W) 520R 580W(Y) 680H(G) 681R 719Q(E) 722I(V) 728S(R) 831K(Y) 832V 836K(Q) 843V(L) 865S(H) 866P(L) 867I 869K(R) 924N(Y) 926L(V) 928Q(S) 931E 935L(K) 936Y 937V(L) (identity: 35.3 %/37.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3k72_C_2 identity=37.4% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQVGNG-VIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120 : *** * ** ** * * * * **** * ** **** ** * * * ** ** *** * * : 3k72_C_2 1:FNLDTEELTAFRVDSAG--FGDSVVQYANSWVVVGAPQKITAANQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECG: 98 SecStr : B SSS EEE SS-- SSEEEE STTEEEEE TT TTT EEEEETTTTEEEE SS S TTSEEEEEETTEEEEEEES EE S: ExpBur :bbbbeeeebebeeebeb--bbebbbbbbeeebbbbbbeeeeeeebbbbbbebbeeeeebeeeeeeeeeebeebbbbebbbebeeeeebbbbbbbbebebe: Contact : b b b b b b queryA 121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220 : * ** *** * : 3k72_C_2 99:RNMYLTGLCFLL----------------------------------------------------------------------------------------: 110 SecStr :S EE EEEEE----------------------------------------------------------------------------------------: ExpBur :eeebbbbbbbbb----------------------------------------------------------------------------------------: Contact :bbb b queryA 221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320 : : 3k72_C_2 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 321:KDLFTELQKKIYVIEGTSKQDLTS----------------------------------------------------------------------------: 344 : : 3k72_C_2 111:------------------------GPTQLTQRLPVSRQECPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 186 SecStr :------------------------SSS EE S S -----------------------------------------------------------: ExpBur :------------------------eeeeeeeebeeeeeeee-----------------------------------------------------------: queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 3k72_C_2 187:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 286 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 345:-----------------------------------------FNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGY: 403 : * * * ** * **** * ** *** * *: 3k72_C_2 287:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFELEMAQEGFSAVFTPDGPVLGAVGSFTWSGGAFLYPPNM-SPTFINMSQENVDMRDSY: 385 SecStr :----------------------------------------- SSB TTSSB TT EEEES STTTTBEEEE SSS- EEE SS S : ExpBur :-----------------------------------------eeebebbbbebbbbbeeebbbbbbbbeeebbbbbbbbeee-eeeebebeeeeeebeebe: Contact : b b b b b queryA 404:LGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQ: 501 :*** * * * ******* * * * * ********* ** **** ** * * ***** * *** * * : 3k72_C_2 386:LGYS-TELALWKGVQSLVLGAPRYQHTGKAVIFT--QVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGW: 482 SecStr :BTSS-EE SSS EEEEEETTGGGT EEEEEE-- TTT EEEEE SSTTS TTS EEEE SSSSSS EEEEE SS SS B EEEEE SST: ExpBur :bbeb-bebbeeeeeebbbbbbbebeebbbbbbbb--beeeeeeebbebeeeeeebebbbbbbbbbbeeeebbebbbbbbbebeeeeebbbbbbbbbeeee: Contact : b b b bbb b b b b queryA 502:LGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQ--GAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLAD: 598 : * * * * **** * * * * *** * ** *** ** **** * * * ** **** * * * * ** * ** *** *: 3k72_C_2 483:RRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVD: 582 SecStr :T S SS S SS BTS EEEEE SSSSS EEEEE TTTTTS BEEEEEB SSS B SS SB BTTSS S SSEEEEEEEEE S SSS E: ExpBur :eebebebebebeeeeeebebbebbbebbebbbeeebbbbbbbbbbeeeebbbbbbbbeeeeebeeeeebebbbeeeeeebeebbbbbebeeebbeeebbb: Contact :bb b b b b queryA 599:VAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGR--LVANLTYTLQLDGHRTRRRGLFPGGRHE-L: 695 : **** * * *** * * ***** ** * ** * * * * * ** * * * *: 3k72_C_2 583:LAVGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSE-QTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKNRSL: 681 SecStr :EEEEESS EEEEEB B EEEEEEESS S STTSS SSS - EEEEEEEEEEE TTT SSTTTS EEEEEEEEESTTSSS BTTT SSEE: ExpBur :bbbbbeebbbbbbbbbbbebeeeeebeeeebeeebbeeeeeeeee-eeebebebbbebeeeebbeeeebbeebebbbebbbbeeeeeebbebeeeeeeeb: Contact : bb queryA 696:RRNIAVTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPI--LRPSLHSE-----TWEIPFEKNCGEDKKCEANLRVSFSPA: 788 : * * * * ** * ** *** * ** *** * * ******* * * ** *** : 3k72_C_2 682:SRVRVLGLKAHCENFNLLLPSCVEDSVTPITLRLNFTL------------VGKPLLAFRNLRPMLAADAQRYFTASLPFEKNCGADHICQDNLGISFSFP: 769 SecStr :EEEEEE SS EEEEEEEE S S SS EEEEEEE ------------ SSTTS B SS EEEEEE SSS EEEE T: ExpBur :eeeeebbeeeeeeebebbbebeeeebeebbebebebeb------------eeeebeeeebeebbbeeeeeeeeebebbbeebbeeeeeeeeebbbebebe: Contact : b b b b queryA 789:RSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVN: 885 : * * * * ** * * *** * * * * * * ** ** * * : 3k72_C_2 770:GLKSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRSLHLTCDSAPVGSQ-GTWSTSCRINHLIFRGGAQITFLATFDVSPK: 868 SecStr :T S EESS EEEEEEEE SS BSS EEEEEEETTEEEE TT SS EEEEEE SSS-SEEEEEEE TTS B TT EEEEEEEEE TT: ExpBur :eeeebbbeeeeebebebebebeeeebebbebbbebbebbebeeeeeeeeeeeebeeebebeeeeeeee-eeeebebebeeeebeeeeeeebbbbbebeee: Contact : bb b bb bbb b queryA 886:SSWGDSVELHANVTCNNEDSDLLEDNSATTI---IPILYPINILIQDQEDSTLYVSFTPKGPK-IHQVKHMYQV-----RIQPSIHDHNIP---TLEAV-: 972 : ** * *** * * ** * * * * * * * * * *** * * * *** : 3k72_C_2 869:AVLGDRLLLTANVSSENNT----PRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLNFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVW: 964 SecStr : SEEEEEEEEEBTTB ---- SSS EEEE EEEE EEEEE S S SS EEEEEEEEE SSS EEEEEE STT SB: ExpBur :bebeeebebbbebebbbee----eeeeeeeeeeeeebebbbebbbeeeeeeeebeeeebeeeeeeeebebebebebebeeebebbbbbebbbebeeeebb: Contact : b b b b bbb queryA 973:--VGVPQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGAL-FRCPV---VFRQEILVQVIGTLEL--VGEIEASSMFSLCSSLSISFNSSKH:1064 : * * * * * ** * * * *** * * * * * * * * * * * : 3k72_C_2 965:MDVEVSHP--QNPSLRCSSEKIAPPASDFLAHIQKNP-VLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKV-SVVSVAEITFDTSVY:1060 SecStr : S EEE T--TS EEEEEE HHHHHHH -EE TTTS EEEEEEEES TT EEEEEE B SGGGGTTT SS -EEEEEEEEE TTTE: ExpBur :eebeeebe--eeeeeeeeeeeeeeeeeeeeeebeeee-ebebebbebbebebebeebebeeebbbbbebebbbbbbeebeeeeb-bbbbbbebebeeeee: queryA 1065:FHLYGSNA:1072 : * * *: 3k72_C_2 1061:SQLPGQEA:1068 SecStr :EESSS G: ExpBur :bbeeeeee: |