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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [848 aa] | Integrin alpha-M :ITAM_HUMAN |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7usm_A_1 identity=36.2% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQV-GNGVIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120 : *** * * * ** * * * * **** * * ****** ** * * * ** ** *** * ** : 7usm_A_1 1:FNLDTENAMTFQ--ENARGFGQSVVQLQGSRVVVGAPQEIVAANQRGSLYQCDYSTGSCEPIRLQVPVEAVNMSLGLSLAATTSPPQLLACGPTVHQTCS: 98 SecStr : B TT EEEE-- TTTTSEEEEETTTEEEEE TT EEETTEE EEEEETTTTEEEE SS TTSEEEEEETTEEEEEEEEEEEEE S: ExpBur :ebbbeeeebebe--eebeebbebbbbbeeeebbbbbbebeeeeeeebbbbbbbeeeeebeebebeeeeeebebbbbebbbeeeeeeebbbbbbbbeeeee: queryA 121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220 : *** *** ** ** : 7usm_A_1 99:ENTYVKGLCFLFGSNLR-----------------------------------------------------------------------------------: 115 SecStr :S EEEEEEEEEE SSSS-----------------------------------------------------------------------------------: ExpBur :eeeebeebbbebeeebe-----------------------------------------------------------------------------------: queryA 221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320 : : 7usm_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 321:KDLFTELQKKIYVIEGTSKQDLTSFNM-------------------------------------------------------------------------: 347 : : 7usm_A_1 116:---------------------------QQPQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 188 SecStr :--------------------------- --------------------------------------------------------------------: ExpBur :---------------------------ebeee--------------------------------------------------------------------: queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 7usm_A_1 189:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 288 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 348:--------------------------------------------ELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGY: 403 : * * * ** ** ***** * *** *: 7usm_A_1 289:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEMSQEGFSAAITSNGPLLSTVGSYDWAGGVF-LYTSKEKSTFINMTRVDSDMNDAY: 387 SecStr :------------------------------------------- TT TTSEEEE SSSEEEEETTHHHHTBEEE-EESSSS EEEE TTTTTT : ExpBur :-------------------------------------------eeebbebebbbbbeebbbbbbbbbeeebbbbb-bbeeeeeeeebebeeeeeebeebe: queryA 404:LGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQ: 501 :*** * * ******* * * * * * * ***** *** ** **** * * * ***** * *** * * : 7usm_A_1 388:LGYAAAII-LRNRVQSLVLGAPRYQHIGLVAMFR--QNTGMWESNANVKGTQIGAYFGASLCSVDVDSNGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGR: 484 SecStr :BTSEEEEE-EETTEEEEEEEETTSTTTBEEEEEE--EETTEEEEEEEEE STTS BTS EEEE SS SSS EEEEEEEEEE SSBEEEEEEEE TT: ExpBur :bbebebeb-eeeeeebbbbbbbebeeebbbbbbb--eeeeebeeebebebeeeebbbbbbbbbbebeeeeebbbbbbbbbebeeeeebbbbbbbeebeee: queryA 502:LGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEE--QGAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLAD: 598 : * * * * **** * * * * *** * *** *** ** **** * * * * ** **** * * ** * * ** *** *: 7usm_A_1 485:ARWQCDAVLYGEQGQPWGRFGAALTVLGDVNGDKLTDVAIGAPGEEDNRGAVYLFHGTSGSGISPSHSQRIAGSKLSPRLQYFGQSLSGGQDLTMDGLVD: 584 SecStr : EEEE TTBTT TTS EEE SSSSSS EEEEETTHHHHT EEEEE EETTTEE SS SEEEEHHHH TT STTSEEE SS SSSSSS E: ExpBur :eebeeeeebebeeeeeebebbebbbebeebbeeebbbbbbbbbbbeeeebbbbbbbbeeeebbeeeeebebbbeeeeeebeebbebbbeeebbbebebeb: queryA 599:VAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI-KSLIPQF-QGRLVANLTYTLQLDGHRTRRRGLFPGGRHELR: 696 : *** * * ** * * * * ** ** * ** * ** * ** * * * *: 7usm_A_1 585:LTVGAQGHVLLLRSQPVLRVKAIMEFNPREVARNVFECXXXXXXG-KEAGEVRVCLHVQKSTRDRLREGQIQSVVTYDLALDSGRPHSRAVFNETKNSTR: 683 SecStr :EEEEETTEEEEEEB EEEEEEEEEESSSSB HHHH ------ - EEEEEEEEEEEEESS S TTT EEEEEEEEETTTSSS S EETTTSSSEE: ExpBur :bbbbbebbbbbbbbbbbbebebebebeeeebeeebbee------e-eeebebebbbebeeebebebeeeebebebbbbbbbbeeeeebbbbbeeeeeeeb: queryA 697:RNIAVT-TSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRL: 795 :* * * * * * *** ***** *** * * * * ******* * * * ** * : 7usm_A_1 684:RQTQVLGLTQTCETLKLQLPNCIEDPVSPIVLRLNFSL---VGTPLS--AFGNLRPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMSLDCLVV: 778 SecStr :EEEEEE SS EEEEEEEEESS S TTS EEEEEEEEE---EE BT--TTTSB EE TTS EEEEEE B SSSS EEEEE TT B T: ExpBur :eeeeebeeeeeebebebbbeeebeeeeebbebebebeb---ebeebe--ebeebebbbbeebeeebebebbbebeeeeeeebebebbbebebeeeebbbb: queryA 796:TAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLS-RALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGDS: 891 : * * ** * * ** ** *** ** ** *** * * * * : 7usm_A_1 779:GGPREFNVTVTVRNDGEDSYRTQVTFFFPLDLSYRKVSTXXXXXXXXXWRLACESXXXXXXXXXLKSTSCSINHPIFPENSEVTFNITFDVDSKASLGNK: 878 SecStr :TS SEEEEEEEEE SS EES EEEEEB TTEEEEE --------- EEE --------- B EEE STTEE TT EEEEEEEEEE TT SE: ExpBur :ebeeebebebbbebeebbbebbebbbebeeebeeeebee---------eebebee---------eeebbbebbeeebeeebebebebbbbbeeebebeee: queryA 892:VELHANVTCNNEDSDLLEDNSATTIIPILYPINILIQDQEDSTLYVSFTPKGPKIHQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPITHQWSVQ: 991 : * **** * * * ** * ** * *** * * ** * * : 7usm_A_1 879:LLLKANVTSEN-NMPRTNKTEFQLELPVKYAVYMVVTSHGVSTKYLNFTASENTSRVMQHQYQV---SNLGQRSLP-ISLVFLVPVRLNQTVIWDRPQVT: 973 SecStr :EEEEEEEE TT- GGGEEEEEEEB EE EEEE TTS EE SS EEEEEEEEEE---EE SS EE-EEEEEEEEEEETTEESBS EEE: ExpBur :bebebbbebeb-eeeeeeebeeeeebebebbbebbbeeeeebeeebeeeeeeeeeeebebbbeb---bbebebebe-bebbbbbbbebeebebbeebebe: queryA 992:MEPPVPCHYEDLERLPDAAEPCLPGALFRCPVV:1024 : **** * ***: 7usm_A_1 974:FSENLSSTCHTKERLPSHSD--FLAELRKAPVV:1004 SecStr :ESS EEEEEEE S S --HHHHHHH EE: ExpBur :beeebeeeeeeeeeeeeeee--eeeebeeebeb: |