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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | INTEGRIN ALPHA V | |
2 | b | O 1 (A) | non-polymer(MN) | MANGANESE (II) ION | 530D 532N(D) 534D 536L(F) 538D (identity: 60.0 %/29.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1l5g_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425 :** * * * * * * * * * * * **** * ** *: 1l5g_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244 SecStr :SS GGGTTTB TTSEEEE TTSEEEEEETBHHHHTBEEEEEEHHHHHHT TT SS TT EE GGGTT BTSEEEEE SSSSS EEEEEET: ExpBur :eebebebbbebebbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeebeebeeebebeeeeeeeeebebbebbbbbebbeeeebbbbbbbb: queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518 :* * * * * * * *** * * ****** * * * * * * * : 1l5g_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337 SecStr :THHHHTBEEEEE ----SSS EEEEEE SSTTS BTSEEEEE TTSSS EEE-EEETT EEE TTS EEE EEEEEEE TTS EEEE B SSTT--: ExpBur :ebeeeebbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbbbbbbbeeebebeeeebebeeee--: queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605 : *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** : 1l5g_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430 SecStr :S GGGEEEE S TT SSS EEEEETT SGGG EEEEEEEETTEEEEEEEEEEE ------- TTS TTSEEEE S SSSSS EEEEETTTT: ExpBur :bebbbbbbebbbbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbeeeebbebeb-------eeeeeeeebbbbebbebeeebbebebbbbbbbbbbbb: Contact : b b b b b queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697 : * *** * ** * * * * * * ** ** ** * * : 1l5g_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525 SecStr :EEEEE B EEEEEE EES SS TT EE SSS EEEEEEEE EEEE SS S----- B EEESS S TT EEETTS SEEE B: ExpBur :bbbbbbbbbbbebeebbebeeeebeeeeeebebeeeeeebbbbebebbbebebeeebee-----ebebebbbbbbeebeeeeebbbbbbeeeebeeeeeb: queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790 : * * * * ** * * * * *** * * * **** * * ** : 1l5g_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614 SecStr : SSS EEEEEE GGG S EEEEEE B-------- SS S TTTT EE TT S EEEEE S-- SS S EEEEE - TT: ExpBur :ebbeeeeeeeeebebbbeeeeebebebebbbbebebeb--------eeebeeebeebebbeeeeeeeeeeeebbbbee--beeeeebebebbbebe-eee: queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890 : * * * ** * * * * ** * * * * *** * * : 1l5g_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709 SecStr : EEESSS EEEEEEEEEEE SS BSS EEEEE SS EEE - S SSSB EE SS---SEE EE SSB- TTEE BEEEEEE TT S: ExpBur :eebebbeebebbbebebbbeeebbbebebbbebeebbebebb-beeeeebeebebeeeeeee---ebbbbbebeeeb-eeeeeeebbbebbbeeeeeeee: queryA 891:SVELHANVTCNN: 902 :** *: 1l5g_A_1 710:SVKFDLQIQSSN: 721 SecStr :EEEEEEEEE S : ExpBur :bbebebbbebeb: |