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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [601 aa] | Integrin alpha-5 :ITA5_HUMAN | |
2 | b | M 1 (A) | non-polymer(CA) | CALCIUM ION | 412P(E) 413S 415Q(D) 417T 419L(D) (identity: 40.0 %/32.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3vi3_A_1 identity=32.6% |
queryA 353:GISADLSR-GHAVVGAVGAKDWAGGFLDLKADLQDDTF--------IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAPRYQ-HMGRVLLFQ: 437 :* ** * * * * * * * * **** * * * * * * * : 3vi3_A_1 167:GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILN: 266 SecStr :TSEEEE TT EEEEETTHHHHTBEEEEE HHHHHHH TTSS TT EE GGG S BTSSEEEE SSSSS EEEEEEEEEETTEEEEEEE : ExpBur :bebbbbbeebbbbbbbbbbbeebbbbbbbebebbeebbeeeebeeebeebbebeeeeeeeeebebbbbbbbbbbbeeeeebbbbbbbeeeeeebebbbbb: Contact : b b b b b queryA 438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDI: 531 : * * * **** ** ** ** **** * *** * * * * **** * * * : 3vi3_A_1 267:----GSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLL-VGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDL: 361 SecStr :----SSS EEEEEE SSTTS TTSEEEEE SSSSS EEE-EEETT EEE TT EEE EEEEE B SS B SS SEEEE STT GGGEEEEEESS: ExpBur :----beebeeeeebebeeeebbbbebbbbbbbbeeeeebbb-bbbbebeeebeeeeebbbbbbbbbbbeeebbeeeeeeebebeeeebebbbbbbebebb: queryA 532:NGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI-QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFS: 625 : ** *** *** ** * * * *** *** * ** * ** * * * ** * ** * : 3vi3_A_1 362:DQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIF: 461 SecStr :SSSSS EEEEEETT STTSS EEEEE EETTEE SS SEEE SS SS TTSSEEESS SSSS EEEEEGGGTEEEEE B EEEEEEEEEES: ExpBur :beeeeebbbbbbbebbeeebbbbbbbbbbeebbeeeebbebebebeeeeeebebbebbbbeeebbebebbbbbbbbbbbbebbbbebbbbbebebebebe: queryA 626:PAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVAN---LTYTLQLDGHRTR---RRGLFPGGRHE-LRRNIAVTTSM--SCTDFSFHF--: 714 :** * * * * * * ** * **** ** ** * * * : 3vi3_A_1 462:PAMFNPEERSC--SLEGNPVACINLSFCLNAS-------GKHVADSIGFTVELQLDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCREMKIYLRN: 552 SecStr :S EE TT E--ESSSSEE EEEEEEEEEEE------- SSS SEEEEEEEEEETTTTTTTS EEETTTSSSEEEEEEEEETT EEEEEEEEE : ExpBur :eeebeeeeeeb--eeeeeebbbbebebbbebe-------beebeeebebebebebbeeeeeeeeebbbbeeeeebeeeeebebebeeeeeeeebebbbee: queryA 715:PVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSET: 762 : * *** ***** * * *** ** : 3vi3_A_1 553:ESEFRDKLSPIHIALNFSL--DPQAPVDSHG--------LRPALHYQS: 590 SecStr : S S SS EEEEEEEEE-- SSS SSS-------- EE TTS: ExpBur :eeebeeeeeebbbbbebeb--eeeeeeeeee--------beebebeee: |