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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | INTEGRIN, ALPHA V | |
2 | b | M 1 (A) | non-polymer(CA) | CALCIUM ION | 468D 470D(N) 472D 474E(Y) 476E(D) (identity: 40.0 %/29.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1jv2_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425 :** * * * * * * * * * * * **** * ** *: 1jv2_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244 SecStr :S STTTTTT TTSEEE TTS EEEETTHHHHTBEEEEE HHHHSTT TT S TTEEE GGG S BTSEEEEE SSSSS EEEEEET: ExpBur :eebeeebbbebbbbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeebebeeebebeeeeeeeeebebbebbbbbebeeeeebbbbbbbb: queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518 :* * * * * * * *** * * ****** * * * * * * * : 1jv2_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337 SecStr :THHHHT EEEEEE----TTT EEEEEE SSTTS TTSEEEEE TTSSS EEE-EEETT EEE TTS EEE EEEEEEE TTS EEEE B SSSS--: ExpBur :ebeeebbbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeeebbbbbbbbbeeebeeeeeebebeeee--: Contact : b b b b b queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605 : *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** : 1jv2_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430 SecStr :S SBT B S SS SSS BEEETT SGGG EEE EETTEE S S EEE ------- SSS TTSEEE S SSSSS EEEEEETTTT: ExpBur :bebbbbbbebbbbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbeeeebbebeb-------eeeeeeeebbbbebbbbeeebbebebbbbbbbbbbbb: queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697 : * *** * ** * * * * * * ** ** ** * * : 1jv2_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525 SecStr :EEEEEEB EEEEE EEESS EE TT B SSS B EEEEEEEEEEE SSS S----- B EEEEEE TT TT EESSS SSEEEEE : ExpBur :bbbbbbbbbbbebeeebebeeeebebeeeeeeeeeeeeebbbbbbebbbebebeeebee-----ebebebebbbbeebeeeeeebbbbbeeeebeeeeeb: queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790 : * * * * ** * * * * *** * * * **** * * ** : 1jv2_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614 SecStr : B STT EEEEEEEE GGG SS EEEEEEEE -------- SS S SSS EE TT SEE EEEE S-- SSSS EEEEE - TT: ExpBur :ebbeeeeeeeeebbbbbeeeeebebebebbbbbbebeb--------eeebeeeeeebebbeeeeeeeeeeeebbbeee--beeeeebebebbbebe-eee: queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890 : * * * ** * * * * ** * * * * *** * * : 1jv2_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709 SecStr : EESSS EEEEEEEEEEE SS BSS EEEEE TT EEEE- SSTTSB EEEESSS--- EEEEEE SSB- SS B EEEEEEE SSSSS: ExpBur :eebebbeebebebebebbbeeebbbebebbbebbebbeeebb-beeeeeebebebeeeeeee---eebbbbebeeeb-eeeeeeebbbebbbeeebeeee: queryA 891:SVELHANVTCNN: 902 :** *: 1jv2_A_1 710:SVKFDLQIQSSN: 721 SecStr :EEEEEEEEE S : ExpBur :ebebebebebeb: |