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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [601 aa] | Integrin alpha-5 :ITA5_HUMAN | |
2 | b | L 1 (K) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 397P(R) 398E(Q) 399V(A) 400R(S) 432R(Y) 447Q(S) 448V(L) 450T(N) (identity: 0.0 %/32.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3vi4_A_1 identity=32.6% |
queryA 353:GISADLSR-GHAVVGAVGAKDWAGGFLDLKADLQDDTF--------IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAPRYQ-HMGRVLLFQ: 437 :* ** * * * * * * * * **** * * * * * * * : 3vi4_A_1 167:GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILN: 266 SecStr :TSEEEE TT EEEEETTHHHHTBEEEEE HHHHHHH TTSS TT EE GGG S BTSSEEEE SSSSS EEEEEEEEEETTEEEEEEE : ExpBur :bebbebbeebbbbbbbbbbbeebbbbbbbebebbeebbeeeebeeebeebbebeeeeeeeeebebbbbbbbbbbbeeeeebbbbbbbeeeeeebbbbbbb: Contact : bbbb b b queryA 438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDI: 531 : * * * **** ** ** ** **** * *** * * * * **** * * * : 3vi4_A_1 267:----GSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLL-VGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDL: 361 SecStr :----TTT EEEEEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE TT EEE EEEEE EETTEE SS SEEEE STT GGGEEEE T: ExpBur :----beebeeeeebebeeeebbbbebbbbbbbbeeeeebbb-bbbbebeeebeeeeeebbbbbbbbbbeeeebeeeeeeebebeeeebebbbbbbebebb: Contact : bb b queryA 532:NGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI-QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFS: 625 : ** *** *** ** * * * *** *** * ** * ** * * * ** * ** * : 3vi4_A_1 362:DQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIF: 461 SecStr :T SSS EEEEETT STTSSBEEEEE EETTEE SS SEEE SS SS BTSEEEEEE SSSSS EEEEEEGGGTEEEEE B EEEEEEEEEET: ExpBur :beeeeebbbbbbbebbeeebbbbbbbbbeeebbeeeebbebebeeeeeeeebebbebbbbeeebbebebbbbbbbbbbbbebbbbbbbbbbebebebebe: queryA 626:PAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVAN---LTYTLQLDGHRTR---RRGLFPGGRHE-LRRNIAVTTSM--SCTDFSFHF--: 714 :** * * * * * * ** * **** ** ** * * * : 3vi4_A_1 462:PAMFNPEERSC--SLEGNPVACINLSFCLNAS-------GKHVADSIGFTVELQLDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCREMKIYLRN: 552 SecStr :T EE TT E--ESSSSEE EEEEEEEEEEE------- TTS SEEEEEEEEEETGGGTTTS EEETTTSSSEEEEEEEEETT EEEEEEE S: ExpBur :eeebeeeeeeb--eeeeeebbbbebebbbebe-------beebeeebebebebbbbbeeeeeeeebbbbeeeeebeeeeebebebeeeeeeeebebbbee: queryA 715:PVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSET: 762 : * *** ***** * * *** ** : 3vi4_A_1 553:ESEFRDKLSPIHIALNFSL--DPQAPVDSHG--------LRPALHYQS: 590 SecStr : S S SS EEEEEEEEE-- SSS SSS-------- EE TTS: ExpBur :eeebeeeeeebbbbbebeb--eeeeeeeeee--------bebbeeeeb: |