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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [582 aa] | Integrin alpha-4 :ITA4_HUMAN | |
2 | b | L 1 (A) | non-polymer(CA) | CALCIUM ION | 530D 532N(D) 534D 536L(F) 538D 556G (identity: 66.7 %/34.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3v4v_A_1 identity=34.7% |
queryA 322:DLFTELQKKIYVIEGTSKQD-LTSFNMELSS--SGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAG-YLGYTVTWLPSR-QK: 416 :** *** * * ** * * *** * ** * * * * * **** * * * : 3v4v_A_1 138:DLRTELSKRI----APCYQDYVKKFGENFASCQAGISSFYTKDLIVMGAPGSSYWTGSLFVY--NITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQH: 231 SecStr :T GGG EEE---- TT TT SSTTTTT BTSSEEE SSEEEEEETTHHHHTBEEEEE--ETTTTB BB TT S TT BTSSEEEE SS TT: ExpBur :ebeeeeeeeb----ebbeeeeeeeebeeebbbebbebbebbeebbbbbbbbbeeebbbbbbb--beeeeeebbbeeeeeebeeebebbebbbbbbbeeee: queryA 417:TSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQRRQLGF---EEVSELQGD: 513 :* *** * * * ***** * ** ** ** *** **** * * * * : 3v4v_A_1 232:TTEVVGGAPQHEQIGKAYIFSIDEK--ELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLL-VGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGS: 328 SecStr :S EEEEEETTGGGT EEEEEEE SS--SEEEEEEEE SSTT TTSEEEEE TT SSS EEE-EEETT SSS EEEEEEE SSSS EE SS B TT: ExpBur :eebbbbbbbebeebbbbbbbbbeee--bbeeeeebebeeeebbbbbbbbbbbbbeeeebbbb-bbbbbbeeeebbbbbbbbbbeeeebebeeeeeebebe: queryA 514:PGYPLGRFGEAITALTDINGDGLVDVAVGAPLEE--QGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAVGA--ESQMIV: 609 : * **** * * ** ** *** *** * *** ** *** * * ****** * ** ** * * * ****** : 3v4v_A_1 329:DKYA-ARFGESIVNLGDIDNDGFEDVAIGAPQEDDLQGAIYIYNGRADGISSTFSQRIEGLQISKSLSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVL: 427 SecStr : TT- TTS EE SS SSS EEEEETTHHHHTBEEEEE EETTEE SS SEEEEGGGT TT SEEEEEEEEE SSSSSS EEEEEEGGGTEEEE: ExpBur :eeeb-bbbbebbbbbbebbeeeeebbbbbbbbbeeebbbbbbbbbbeebbbeeebbebebeeeeeebbbbbbbbbbebebbeeebebbbbbbbebbbbbb: Contact : b b b b b b queryA 610:LSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGHRTRR---RGLFP--GGRHELRRNIAVTT-: 703 :* **** * * * * ** * * * * * ** * * * * * * : 3v4v_A_1 428:LRTRPVVIVDASLSH-PESVNRTKFDCVENGWPSV--CIDLTLCFSYKG--KEVPGYIV--LFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSR: 520 SecStr :E B EEEEEEEEE - SB TT S BTTB --EEEEEEEEEEE --TT SEEE--EEEEEESS S SS SEE SSSTT SEEEEEEEEESS: ExpBur :bbbebbbebebebee-eeebeeeeeebeeeeeebb--bbebbbebebee--eeeeeebe--bebebebbeeeeeeeeebbbbeeeeeeeebeeebebeee: queryA 704:SMSCTDFSFHFPVCVQDLISPINVSLNFSL: 733 : * * * ** *: 3v4v_A_1 521:EANCRTHQAFMRKDVRDILTPIQIEAAYHL: 550 SecStr :S EEEEEEEEE SS SS EEEEEEEEE: ExpBur :eeeeeebebbbeeeeeeeeeebebebebeb: |