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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [939 aa] | Integrin alpha-IIb :ITA2B_HUMAN | |
2 | b | K 1 (A) | non-polymer(CA) | CALCIUM ION | 771C 772G 773E 774D 775K(D) 812E (identity: 83.3 %/30.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8gcd_A_1 identity=30.9% |
queryA 396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491 : ** ** ** * * *** * * * * **** ** ** ** **** * * * : 8gcd_A_1 258:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 350 SecStr : GGGTT TTSEEEEE SS SSS EEEEEETTHHHHTBEEEE T-----TS EEEE SSTTS BTSSEEEE TTSSSS EEE-EEETT- EE SS: ExpBur :eeebeebebbebbbebbbeeeeeeebbbbbbbbbbeebbbbbbbee-----ebeeeeebeeeeeebebbebbbbbbbbeeeeebbb-bbbbe-beeeeee: queryA 492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578 : *** ** * * * **** ** * * ** * ** ** * * * * ** *** : 8gcd_A_1 351:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 447 SecStr : SSEE EEEEE STT S SEE-EE STT-- TTS EEE SS SSS EEEEETT TTTTSBEEEEE BTTB SS SEEEE SS TT : ExpBur :eeebebbbbbbbebeeeeeeeeeeebe-bebeeee--bebbbbbbebebbbeeeeebbbbbbbebbeeeebbbbbbbbeeebbeeeeebebebebeeebb: queryA 579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675 : ** * * * * * *** * * *** * * ** * *** * *: 8gcd_A_1 448:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 539 SecStr :--BTSEEEESS SSSSSS EEEEETTTTEEEEE EEEEEEEEEE S B SS - EE TTS EEEEEEEEEEEEEE SS S-----S EEEEEE: ExpBur :--bbebbebeeebeebebbbbbbbbeeebebbbbebbbbbebebebeeeebbebeee-eeebeeeeeebbbbebebbbbbeeeebee-----ebebbbeb: queryA 676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761 :*** * ** * * * * * * * *** *** ** * * * * : 8gcd_A_1 540:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 624 SecStr :EES SS GGG EEETTT -------SEEEEEEE TT S EEEEEEEEE GGG SSS EEEEEEEE T--------T S EEEE EEE: ExpBur :ebbeeeeeeebbbebbeeee-------beeeeebebeeeeeeeeeeeebbbeeeeebeeeeeebbbbbebeeeeeee--------eeeeebeeeeeeebe: queryA 762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860 : **** * * * * * * * * * ** * * * * * * * * : 8gcd_A_1 625:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 717 SecStr :E-EE B S GGGSS EEEEEEEES - EETTS EEEEEEEEEE SS BTTEEEEEEE SS EEEEEE SSGGGSS -- EEEE SSS---SEEEE: ExpBur :e-ebbbbeebeeeeebebebebebeeeee-ebeeebebebebebebbbebbbbbbbbbbbebeeebebeebebeeeeeeeb--ebeeeeeee---ebbbe: Contact : bbbbb b queryA 861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905 :* * * * * ** * : 8gcd_A_1 718:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 761 SecStr :EEEESSB- TTEEEEEEEEEE GGG SEEEEEEEEE SSS: ExpBur :bebbeeb-eeeeebbbebebbbeeeeeeeeebebbbbbebebeee: |