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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | Integrin alpha-V | |
2 | b | K 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 626P 628E(I) 629I(L) 630P(N) 633E(N) 635E(T) 646E(S) 647G(C) (identity: 12.5 %/29.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:1m1x_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425 :** * * * * * * * * * * * **** * ** *: 1m1x_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244 SecStr :SS TTTTTTT TTSEEEEETTTEEEEE TTHHHHTB EEEEETTTTTTT TT SS TT EE GGGTT BTSEEEEE SSSSS EEEEEET: ExpBur :eebeeebbbebbbbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeebbebeeebebeeeeeeeeebebbbbbbbbebeeeeebbbbbbbb: queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518 :* * * * * * * *** * * ****** * * * * * * * : 1m1x_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337 SecStr :THHHHTBEEEEE ----SSS EEEEEE SSTTS BTSEEEEE TTSSS EEE-EEETT EEE TTS EEE EEEEEEE SSS EEEEEEE SSSS--: ExpBur :ebeeebbbbbbbb----beebeeeeebebeeeebebbbbbbbbbbbeeeebbbb-bbbbebeeebeeeeeebbbbbbbbbbeeebeeeeeebebeeee--: queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605 : *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** : 1m1x_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430 SecStr :S SBT EE S TT SSS EEEEEETT TGGG EEEEEEEETTEE S S EEE ------- SSS TTSEEE S SSSSS EEEEEETTTT: ExpBur :bebbbbbbebebbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbebbbbeeebbebebbbbbbbbbbbb: queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697 : * *** * ** * * * * * * ** ** ** * * : 1m1x_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525 SecStr :EEEEEEB EE EEE EESSSS TT SSS EEEEEEEEEE SSS S----- B EEEEE SS TT EEESSS SSEEEE : ExpBur :bbbbbbbbbbbebeeebebeeeebebeeeeeeeeeeeeebbbbebebbbebebeeebee-----ebebebebbbbeebeeeeeebbbbbeeeebebeeeb: Contact : b bbb b b bb queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790 : * * * * ** * * * * *** * * * **** * * ** : 1m1x_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614 SecStr :B SSS EEEEEEEEE GGG SS EEEEEE -------- SSSSBTTTTB EE TT S EEEEE S-- TTTS EE B - S: ExpBur :ebbeeeeeeeeebebbbeeeeebebebebbbbbbebeb--------eeebeeebeebebebeeeeeeeeeeebbbeee--beeeeebebebbbebe-eee: queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890 : * * * ** * * * * ** * * * * *** * * : 1m1x_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709 SecStr : EEESSS EEEEEEEEEEE SS SS EEEEE TT EEE - S SSSB EEEESSS--- EEEEEE SS - TT EEEEEEEEEE SSS S: ExpBur :eebebbeebebebebebbbeeebbbebebbbebeebbebebb-beeeeebeebebeeeeeee---eebbbbebeeeb-eeeeeeebbbebebeeeeeeee: queryA 891:SVELHANVTCNN: 902 :** *: 1m1x_A_1 710:SVKFDLQIQSSN: 721 SecStr :EEEEEE BB S : ExpBur :ebebebbbebeb: |