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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [598 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | J 1 (J) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 623S(E) 625S(Y) 626P 633E(N) 635E(T) 647G(C) 648V(F) 651T(R) (identity: 12.5 %/32.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6om2_A_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 6om2_A_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSSS EEEEEETTTGGGT EEEEE ----TTT EEEEEE SSTTS TTS EEEE SSSSSS EEE-EEETT EEE TTS EEE BEE: ExpBur :ebbebbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbbbbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 6om2_A_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S BTSEEEEEE TT SSS EEEEEETT SGGG EEEEEEEETTEE SS SEEEE ------- SSS TT: ExpBur :bbbbbeeebebeeeebebeeee--bebbbbbbebebbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbeeebbbebeb-------ebeeeeeeebbbb: queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678 : * * * * * *** * *** * ** * * * * * * **: 6om2_A_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501 SecStr :SEEEEEE SSSSSS EEEEEETTTTEEEEE B EEEEEEEEEEE SEE TT EE SSS EE EEEEEEEEEEEEESS S-----EEEEEEEEEES: ExpBur :ebbebeeebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeebebeeeeeebbbbebebbbebeeeeebee-----ebebebebebb: Contact : b bb b b bb b queryA 679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 6om2_A_1 502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr :TTS SSS EEETTT SSEEEE EEETT EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :eebeeeeeebbbbbeeeebeeeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |