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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [913 aa] | Integrin alpha-IIb :ITA2B_HUMAN | |
2 | b | I 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 566S 614P 672T(N) 730N 731F(V) 732S 733L (identity: 71.4 %/30.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4cak_A_1 identity=30.9% |
queryA 396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491 : ** ** ** * * *** * * * * **** ** ** ** **** * * * : 4cak_A_1 227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319 SecStr : GGGTT TTSEEEEE SS SSS EEEEEETTTTTTT EEEEE T-----TS EEEEEE SSTTS TTSEEEEE SSSSSSBEEE-EEETT- EE SS: ExpBur :eebbeebebbebbbebbbeeeeeebbbbbbbbbbbeeebbbbbbbe-----ebeeebbbebeeeebbbbebbbbbbbbbbbbebbb-bbbbe-bbeeeee: queryA 492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578 : *** ** * * * **** ** * * ** * ** ** * * * * ** *** : 4cak_A_1 320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 416 SecStr : TTEE EEEEE SSSSEE S SEE-EE STT--S TTSSEEEEESSSSSSS EEEEEETT SSSSS EEEEE EETTEE SS SEEEE SS TTS : ExpBur :eeebebbbbbbbbbbbbbbbbbbbbbb-bbbeeee--bebbbbbbebbbbbbbebebbbbbbbebbeebebbbbbbbbbbbbbbbeeeeebebebeeebb: Contact : b queryA 579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675 : ** * * * * * *** * * *** * * ** * *** * *: 4cak_A_1 417:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 508 SecStr :--EEEEEEEEE SSBSSS EEEEEETTTTEEEEE EEEEEEEEE S B TT - EE SSS EEEEEEEEEEEEEE TT S-----S EEEEEE: ExpBur :--bbebbebeebbbebbbbbbbbbbeebeebbbbbbbbebebebebebeeebeeeee-ebebeeeeeebbbbebebbbbbeeeeeee-----ebebebeb: Contact : b b queryA 676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761 :*** * ** * * * * * * * *** *** ** * * * * : 4cak_A_1 509:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 593 SecStr :EETTTS GGG SEEETTT S-------SEEEEEEE TT SS EEEEEEEEE GGG SS EEEEEEEE T--------T B EEE EEE: ExpBur :bbbeeeeeeebbbbbbeeee-------beeeeebebbeeeeebeeeeebbbeeeeebeeeeebbbbbbebbbeebee--------eeebbbbbbbbbbbb: Contact : bbbb queryA 762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860 : **** * * * * * * * * * ** * * * * * * * * : 4cak_A_1 594:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 686 SecStr :E-EE B TTTT EEEEEEEES -SEETTS EEEEEEEEE SS BTTEEEEEE TTEEEEEEEE -- BB-- EEEE SSS---S EEE: ExpBur :b-bbbbeeebbbbbbbbbebebeeeeeee-ebeeeeebebebebebbbebbbbbbbbbbbbbbebbbbbebebee--eebb--bbbbbbeee---ebbbb: queryA 861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905 :* * * * * ** * : 4cak_A_1 687:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 730 SecStr :EEEETTB- TTEEEEEEEEEEE TT SEEEEEEEEE SSS: ExpBur :bbbbbbb-eeeeebbbebbbbbeeeeeeeebbbbebbbbbbbbbe: |