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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [912 aa] | Integrin alpha-IIb :ITA2B_HUMAN | |
2 | b | H 1 (A) | non-polymer(CA) | CALCIUM ION | 530D 532N(D) 534D 536L(Y) 538D (identity: 60.0 %/30.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8gce_A_1 identity=30.9% |
queryA 396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491 : ** ** ** * * *** * * * * **** ** ** ** **** * * * : 8gce_A_1 258:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 350 SecStr : TTTTT BTSS B SS TTTT B EESS TTTT EEEEE T-----T EEEEEE SSTTS TTSSEEEE TTSSSS EEE-EEETT- EE SS: ExpBur :eeebeebebbebbbebebeeeeeeebbbbbbbbbbeebbbbbbbbb-----ebeeebebebeeeebebbebbbbbebbeeebebbb-bbbbe-bebeeee: queryA 492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578 : *** ** * * * **** ** * * ** * ** ** * * * * ** *** : 8gce_A_1 351:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 447 SecStr : S EE EEEEE STT S SEE-EE STT-- TTS EEEEESTT SSS EEEEEETT SSSSS EEEEEEB SSSB SS SEEEE S TTS : ExpBur :eeebebbbbbbbebeeeeeebeeeebe-bebeeee--bebbbbbbebeebbeeeebbbbbbbbebbeeeebbbbbbbbeeebbeeeebbebebebeeebb: Contact : b b b b b queryA 579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675 : ** * * * * * *** * * *** * * ** * *** * *: 8gce_A_1 448:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 539 SecStr :--EEEE SS SSSSSS EEEEETTTTEEEEE EEEEEEEEE S B TT - EE TTS EE EEEEEEEEEE SS S-----S EEEEEE: ExpBur :--bbebbebeebbeebebbbbbbbbeebbebbbbbbbbbbebebebeeeebbeeeee-eeebeeeeeebbbbebebbbbbebeebee-----ebebebeb: queryA 676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761 :*** * ** * * * * * * * *** *** ** * * * * : 8gce_A_1 540:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 624 SecStr :ESSTTS STT EEETTT S-------SEEEEEEE TT S EEEEEEEEE TTT SS EEEEEEEE T--------TS SSEEEE EEE: ExpBur :bbbeeeeeebebbbbbeeee-------ebeeeebebeeeeeeeeeebebbbbeeeebeeeeeebbbbbebeeeeeee--------eebeebbeeeeeebe: queryA 762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860 : **** * * * * * * * * * ** * * * * * * * * : 8gce_A_1 625:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 717 SecStr :E-EE B SS SSS EEEE -S TTS EEEEEEEEESSS BTT EEEEE TTEEE SS SS SS -- S SSS--- TT S: ExpBur :e-ebbbeeebeeeeeeebebebeeeeeee-ebbbbbebebebebeebbebbbbbbbbbbbeeeebbeeebbebeeeeeeee--bebbbeeee---eeeeb: queryA 861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905 :* * * * * ** * : 8gce_A_1 718:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 761 SecStr : S B- TT EEEEEEEEEE TTS S EEEEEE S SSS: ExpBur :eeebeeb-eeeeeeeebbebeeeebeeeeeebebebbbbbebeee: |