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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [905 aa] | Integrin alpha-5 :ITA5_HUMAN | |
2 | b | G 1 (G) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 397P(R) 398E(Q) 432R(Y) 434L(T) 447Q(S) 450T(N) (identity: 0.0 %/32.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7nxd_A_1 identity=32.2% |
queryA 353:GISADLSR-GHAVVGAVGAKDWAGGFLDLKADLQDDTF--------IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAPRYQ-HMGRVLLFQ: 437 :* ** * * * * * * * * **** * * * * * * * : 7nxd_A_1 167:GFSAEFTKTGRVVLGGPGSYFWQGQILSATQEQIAESYYPEYLINLVQGQLQTRQASSIYDDSYLGYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILN: 266 SecStr :TSEEEE TT EEEEESSHHHHTBEEEEE HHHHHHH SS SS TT EE GGG S BTSEEEEE SS SSS EEEEE SSHHHHT EEEEEE: ExpBur :bebbebbeebebbbbbbbbeeebbbbbbbbeeebbebeeeeeeeeebeeeeebeeeeeeeeebebbebbbebbbeeeeebbbbbbbbebeeeebebbbbb: Contact : bb b b b queryA 438:EPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDI: 531 : * * * **** ** ** ** **** * *** * * * * **** * * * : 7nxd_A_1 267:----GSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLL-VGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDL: 361 SecStr :----TTTTEEEEEEE SSTT TTSEEEEE SSSSSS EEE-EEETT EE TT EE EEEEE SS SS SEEEE STT TTSEEEE S: ExpBur :----beebeeeeebebeeeebbbbebbbbbbbbeeeeebbb-bbbbebebeeeeeeebbbbebbbbbbeeeeeeeeeebebebeeeebebbbebbebebb: Contact : b b queryA 532:NGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI-QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFS: 625 : ** *** *** ** * * * *** *** * ** * ** * * * ** * ** * : 7nxd_A_1 362:DQDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGRPIVSASASLTIF: 461 SecStr :S SSS EEEEETT SSS BEEEEE SSS SS SEEE SS SS BTSEEEES SS SSS EEEEETTTTEEEEE B EEEEEEEEE T: ExpBur :beeeeebbbbbbbebeeeebbbbebbebbeeebeeeeebebebebeeeeeebebbbbbbbeeebeebebbbbbbbbbebbebbbbebebbbebebebebe: queryA 626:PAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVAN---LTYTLQLDGHRTR---RRGLFPGGRHE-LRRNIAVTTSM--SCTDFSFHF--: 714 :** * * * * * * ** * **** ** ** * * * : 7nxd_A_1 462:PAMFNPEERSC--SLEGNPVACINLSFCLNAS-------GKHVADSIGFTVELQLDWQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCREMKIYLRN: 552 SecStr :T B TTS SS--B SS B EEEEEEEEEEE------- SS SEE EEEEEEESGGGTTTS EEETTTTBS EEEE EESSS EEEEEEEEE : ExpBur :eeebbeeeeeb--eeeeeebbbbebbbbbebe-------eeeeeeebebebebbbbeebeeeeeebbbbeeeeebeeeeebebeeeeeeeeeebebbbee: queryA 715:PVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSETWEIPFEK-----NCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSN: 809 : * *** ***** * * *** ** * **** * * * * *: 7nxd_A_1 553:ESEFRDKLSPIHIALNFSL--DPQAPVDSHG--------LRPALHYQSKSRIEDKAQILLDCGEDNICVPDLQLEVF-GEQNHVYLGDKNALNLTFHAQN: 641 SecStr :SS S S EEEEEE EE-- SS SS -------- EE SSS EEEEEE B S TT EEEEEE-EES B TTS EEEEEEEEEE: ExpBur :eeebeeeeeebbbbbebee--eeeeeeeeee--------beebebeeeeeeeeeebeebeebeeebebebebebebe-beeeebebbeebebebbbebeb: queryA 810:L-EEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSV----------------ALQMMFNTL---VNSSWG: 889 : * ** * ** * ** ** * * * *** * * * * * * : 7nxd_A_1 642:VGEGGAYEAELRVTAPPEAEYSGL-VRHPGNFSSLSCDYFAVNQ---SRLLVCDLGNPM-KAGASLWGGLRFTVPHLRDTKKTIQFDFQILSKNLNNSQS: 736 SecStr : S S TTEEEEEE SS EEEEE-EE SS SS EEEETTSS---S EEEEEEESS - TT EEEEEEEEE TT S EEEEEEEE SSS S : ExpBur :ebebbbeebbbebebbebbeeeeb-ebebeeeeebebeeeeeee---eebbbbebeeeb-eeeeebebbbebebeebeeeeeebebebebbbebeeeeeb: queryA 890:D------SVELHANVTCN: 901 :* *** * ** *: 7nxd_A_1 737:DVVSFRLSVEAQAQVTLN: 754 SecStr : EEEEE B EEEE: ExpBur :eeeebebebebebebebe: |