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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [856 aa] | Integrin alpha-M :ITAM_HUMAN | |
2 | b | F 1 (D) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 371K(Y) 374A 389F 391G(N) 392N(M) 394P(R) (identity: 33.3 %/36.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7usl_A_1 identity=36.4% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQV-GNGVIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120 : *** * * * ** * * * * **** * * ****** ** * * * ** ** *** * ** : 7usl_A_1 1:FNLDTENAMTFQ--ENARGFGQSVVQLQGSRVVVGAPQEIVAANQRGSLYQCDYSTGSCEPIRLQVPVEAVNMSLGLSLAATTSPPQLLACGPTVHQTCS: 98 SecStr : B SS EEEE-- STTTTSEEEEETTTEEEEEETT STT BEEEEEETTTS EEE TT TT BTSEEEEETTTTEEEEEEEEEEEE S: ExpBur :ebbbeeeeeebe--eebeebbebbbbbeeebbbbbbbeeeeeeeeebbbbebeeeeeebeebebebeeebeebbbbebbbeeeeeeebbbbbbbbeeeee: queryA 121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220 : *** *** ** ** : 7usl_A_1 99:ENTYVKGLCFLFGSNLR-----------------------------------------------------------------------------------: 115 SecStr :S EEEEEEEEEE SSTT-----------------------------------------------------------------------------------: ExpBur :eeeebebbbbbbeeebe-----------------------------------------------------------------------------------: queryA 221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320 : : 7usl_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 321:KDLFTELQKKIYVIEGTSKQDLTS----------------------------------------------------------------------------: 344 : : 7usl_A_1 116:------------------------QQPQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 191 SecStr :------------------------ B -----------------------------------------------------------------------: ExpBur :------------------------ebeeb-----------------------------------------------------------------------: queryA -1:----------------------------------------------------------------------------------------------------: -1 : : 7usl_A_1 192:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 291 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 345:--------------------------------------FNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGY: 406 : * * * * ** ** ***** * *** ****: 7usl_A_1 292:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEHEMSQEGFSAAITSNGPLLSTVGSYDWAGGVF-LYTSKEKSTFINMTRVDSDMNDAYLGY: 390 SecStr :-------------------------------------- SSS TTSSEEE SSSEEEE TTHHHHTB EE-EESSSS EEEE SSGGGTT BTS: ExpBur :--------------------------------------eeeeebebbeebbbbeebbbbbbbbbeeebbbbb-bbeeeeeeeebebeeeeeebeebebbe: Contact : b b b bb b queryA 407:TVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQLGF: 504 : * * ******* * * * * * * ***** *** ** **** * * * ***** * *** * * : 7usl_A_1 391:AAAII-LRNRVQSLVLGAPRYQHIGLVAMFR--QNTGMWESNANVKGTQIGAYFGASLCSVDVDSNGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGRARW: 487 SecStr :EEEEE-EETTEEEEEEEETTGGGTBEEEEEE--EETTEEEEEEEEE STTS BTSEEEEE SS SSS EEEEEEEEEE SSEEEEEEEEE TT : ExpBur :bbbeb-eeeeeebbbbbbbebeeebbbbbbe--eeeeeeeeebebebeeeebebbbbbbebebeeeeebbbbbbbbbebeeeeebbbbbbbeebeeeeeb: queryA 505:EEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEE--QGAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAV: 601 : * * * * **** * * * * *** * *** *** ** **** * * * * ** **** * * ** * * ** *** * *: 7usl_A_1 488:QCDAVLYGEQGQPWGRFGAALTVLGDVNGDKLTDVAIGAPGEEDNRGAVYLFHGTSGSGISPSHSQRIAGSKLSPRLQYFGQSLSGGQDLTMDGLVDLTV: 587 SecStr : EEE TTEEEEEETS EEEEE SSSSS EEEEEETTHHHHTBEEEEE EETTTEE SS SEEEEGGGT TT SBTSEEEEEE SSSSS EEEE: ExpBur :eeeeebebeeeeeebebbebbbebeebbeeeebbbbbbbbbbeeeebbbbbbbbeeeebbeeeeebebbbeeeeeebeebbebbbeebebbebebebbbb: queryA 602:GAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI-KSLIPQF-QGRLVANLTYTLQLDGHRTRRRGLFPGGRHELRRNI: 699 :** * * ** * * * * ** * ** * ** * ** * ** * * * ** : 7usl_A_1 588:GAQGHVLLLRSQPVLRVKAIMEFNPREVARNVFECNDQVV-KGKEAGEVRVCLHVQKSTRDRLREGQIQSVVTYDLALDSGRPHSRAVFNETKNSTRRQT: 686 SecStr :EETTEEEEEEB EEEEEEEEEESSSSB HHHHS SSS -TT EEEEEEEEEE S S TT EEEEEEEEETTT SS S EETTTSSSEEEEE: ExpBur :bbeebbbbbbbbbbbebebebebeeeebeeebbeeeeeee-ebeeebebebbbebeeebeeebeeeebebebebebbbbeeeeeebbbbeeeeeeebeee: queryA 700:AVT-TSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAF: 798 : * * * * * *** ***** *** * * * * ******* * * * ** * : 7usl_A_1 687:QVLGLTQTCETLKLQLPNCIEDPVSPIVLRLNFSLV---GTPLS--AFGNLRPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMSLDCLVVGGP: 781 SecStr :EEE SS EEEEEEEE SS S TTS EEEEEEEEEE---E BG--GGTSB EE TT EEEEEE B STT EEEEEE TT EEETS : ExpBur :eebeeeeeeeebebebeeebeeeeebbebebebebe---beebe--eeeebebebbeebeeebebebbbebeeeeeeebebebbbebebeeeebbebeee: queryA 799:ASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLS-RALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVEL: 894 : * * ** * * ** ** *** ** ** *** * * * * *: 7usl_A_1 782:REFNVTVTVRNDGEDSYRTQVTFFFPLDLSYRKVSTXXXXXXXXXWRLACESXXXXXXXXXLKSTSCSINHPIFPENSEVTFNITFDVDSKASLGNKLLL: 881 SecStr :SEE EEEEEE SS EES EEEEEE TTEEEEEEE --------- EEEE --------- EEEEEEESSSEE TTEEEEEEEEEEE TT TTEEEE: ExpBur :eebebebbbebebbebbebebbbebeeebeeeebee---------eebebee---------eeebbbebbeeebeeebebebebbbbbeeebebeeebeb: queryA 895:HANVTCNNEDSDLLEDNSATTIIPILYPINILIQDQEDSTLYVSFTPKGPKIHQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPITHQWSVQMEP: 994 : **** * * * ** * ** * *** * * ** * * : 7usl_A_1 882:KANVTSEN-NMPRTNKTEFQLELPVKYAVYMVVTSHGVSTKYLNFTASENTSRVMQHQYQV---SNLGQRSLP-ISLVFLVPVRLNQTVIWDRPQVTFSE: 976 SecStr :EEEEE TT- TTTEEEEEEEEEEE EEEE TTS EEE TT EEEEEEEEE---E SS EE-EEEEEEEEEESSS BSEEEEEEEESS: ExpBur :ebbbebeb-eeeeeeebeeeeebebebbbebbbeeeeebbeebebeeeeeeeeebebbbbb---bbebebebe-bbbbbbbbbebeeeebbeebebebee: queryA 995:PVPCHYEDLERLPDAAEPCLPGALFRCPVV:1024 : **** * ***: 7usl_A_1 977:NLSSTCHTKERLPSHSD--FLAELRKAPVV:1004 SecStr : EEEEEEE S S --HHHHHHH EE: ExpBur :ebeeeeeeeeeeeeeee--eeeebeeebeb: |