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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [1063 aa] | Integrin alpha-X :ITAX_HUMAN | |
2 | b | F 1 (F) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 672T 674T(D) 728S(R) 730N 731F 732S(T) (identity: 50.0 %/37.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4nen_A_1 identity=37.0% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQVGNG-VIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120 : *** * ** ** * * * * **** ** **** ** * * * ** ** *** * * : 4nen_A_1 1:FNLDTEELTAFRVDSAG--FGDSVVQYANSWVVVGAPQKITAADQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECG: 98 SecStr : B SSS EEEE STT--TTSEEEEETTTEEEEEEEEEEEETTEEEEEEEEETTT SEEE TT BS BTSEEEEETTTTEEEEEEEEEEEEET: ExpBur :bbbbeeeebebebebeb--bbebbbbbbeeebbbbbbeeeeeeebbbbbbebbbeeeebeebeeeebeebeebbbbebbbeeeeeebbbbbbbbbebebe: queryA 121:QNTYLSGLCYLFRQNLQGP--MLQGRP-GFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDP: 217 : * ** *** * ** * * *** * *** *** * * * * * ** *** * * * *: 4nen_A_1 99:RNMYLTGLCFLL-----GPTQLTQRLPVSRQECPRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNP: 193 SecStr :TEEEEEEEEEEE----- SSS EEESSS B EEEEEEEE STTS THHHHHHHHHHHHHHTTS TTTEEEEEEEESSSEEEEE HHHHHH S G: ExpBur :ebebbbbbbbbb-----beeeeeeebbeeebebebeebbbbbbbbbbeebeeeebeebbebbebbbeebeeebbbbbbbbbbeeeeebbbbeebeebeeb: queryA 218:DALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITD----GEATDSGNIDAAKD---IIRYIIGIGKHFQTKESQETLHKFASKPASEF: 310 : ** * * * ** * * *** ** * ** *** * * * **** ** * ** * * **** * : 4nen_A_1 194:LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEH: 293 SecStr :GGGGGG S B HHHHHHHHHTTTSSGGGT SSSEEEEEEEE S BS S HHHHHHHHHHTT EEEEEE GGGTTSHHHHHHHHHHS SSGGGT: ExpBur :eeebeebeeeeeebebbebbeebbeebbeeeebbbeebeebbbbbbbbeeeebeeebeebbeebeeeebebbbbbbeebeeeeebeebbbebbbeebeeb: queryA 311:VKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLGYTVTW: 410 : * *** * ** **** ** * * ** * **** * ** * *** * **** * : 4nen_A_1 294:IFKVEDFDALKDIQNQLKEKIFAIEGTETTSSSSFELEMAQEGFSAVFTPDGPVLGAVGSFTWSGGAFLYPPNM-DPTFINMSQENVDMRDSYLGYS-TE: 391 SecStr :EEESS SHHHHHH B B GGG SS B STT EEEEEEEETTEEEEEETTHHHHT EEE TTS- EEE TT GGGTTS TTSS-EE: ExpBur :beebeeeebbeeebeeeeebebbeeeeeeeebeebeebbbbbbebbbbbeebbbbbbbbbebebbbbbbbbeee-eeeebebeeeeeebeebebbeb-be: queryA 411:LPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI----YQRRQLGFEE: 506 :* * ******* * * * * ********* ** **** ** * * ***** * *** * * : 4nen_A_1 392:LALWKGVQSLVLGAPRYQHTGKAVIFT--QVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDA: 489 SecStr :EEEETTEEEEEEEETTGGGT EEEEEE--ESSSSEEEEEEEE STTS TTSSEEEE SS SSS EEEEE TT B SSEEE EEEEE TT E: ExpBur :bbeeeeebbbbbbbbebeebbbbbbbb--eeeeebeeebebebeeeebebbbbbbbbebeeeebbbbbbbbbbebeeeeebbbbbbbebeeeeeebeeee: queryA 507:VSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQ--GAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVAVGA: 603 :* * * * * **** * * * * *** * ** *** ** **** * * * ** **** * * * * ** * ** *** * ****: 4nen_A_1 490:V--LYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLAVGA: 587 SecStr :E--E SSEEEEEETSEEEE SSSSSS EEEE TTHHHHTBEEEEE EETTTEE SS SEEEEHHHH TT SBTSSEEEEE SSSSS EEEEEE: ExpBur :e--bbbeeebeebebbebbbebbebbeeebbbbbbbbbbbeeeebbbbbbbbeeeebbbeeeebbbbbeebeeebeebbebbbbebebbebebebbbbbb: queryA 604:ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGR--LVANLTYTLQLDGHRTRRRGLFPGGR-HELRRNIA: 700 : * * *** * * ***** ** * ** * * * * * ** * * * * * : 4nen_A_1 588:RGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSE-QTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKTRSLSRVRV: 686 SecStr :TTEEEEEEB EEEEEEEEEEESSSB TTSS S S- EEEEEEEEEEEEES SS SS EEEEEEEEESTT SS S EETTTSSSEEEEEEE: ExpBur :eebbbbbbbebbbebebebebeeeebeeebeeeeeeeeee-eeebebebbbebebebeebeebeebebebebebbbbeeeeeebbbbeebeeeebeeeee: Contact : b b queryA 701:VTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPI--LRPSLHSE-----TWEIPFEKNCGEDKKCEANLRVSFSPARSRAL: 793 : * * * ** * ** *** * ** *** * * *** ** *** *: 4nen_A_1 687:LGLKAHCENFNLLLPSCVEDSVTPITLRLNFTL------------VGKPLLAFRNLRPMLAADAQRYFTASLPFEXXXXXXXXXXDNLGISFSFPGLKSL: 774 SecStr :E SEEEEEEEEEEE SS S SS EEEEEEEEE------------EE STTSS EE TT EEEEE B ---------- EEEEEE TT SSE: ExpBur :bbeeeeebebebbbebeeeeeeebbebebbbeb------------ebeeeeeeeebebbbbeeeeeebebebbbe----------bebbbebebeeeeeb: Contact : b bbb b queryA 794:RLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVE---MLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890 : * * * ** * * *** * * * * * ** ** * * **: 4nen_A_1 775:LVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAXXXXXXXXXXLHLTCDSAPVGSQ-GTWSTSCRINHLIFRGGAQITFLATFDVSPKAVLGD: 873 SecStr :EETTB EEEEEEEEEE SS BSSEEEEEEEETTEEEE ---------- EEEEEE SSS-SEEEEEEEE SS B TT EEEEEEEEEE TT TT: ExpBur :bbeeeeebebebebebeeeebebbbbebebeebbebeeee----------eebeeeeeeeeee-eeebbebebeeeebeeeeeeebebbbebeeebebee: queryA 891:SVELHANVTCNNEDSDLLEDNSATTI---IPILYPINILIQDQEDSTLYVSFTPKGPK-IHQVKHMYQV-----RIQPSIHDHNIP---TLEAV---VGV: 975 : * *** * ** * * * * * * * * * *** * * * *** * *: 4nen_A_1 874:RLLLTANVSSESNT----PRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLCFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMDVEV: 969 SecStr :EEEEEE B SS ---- SS EEEEEEEEEEE EEEEE SSS EEEE TT TT EEEEEEEEEEEE SSS EEEEEEEEEEEEETTEESEEEEEE: ExpBur :ebebbbebebbeee----eeeeeeeeeeebebebbbebbbeebeeebeebebbeeeeeeeeebebbbebbbebebebebbbbbebbbebeeeebbeebeb: queryA 976:PQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGAL-FRCPV---VFRQEILVQVIGTLEL--VGEIEASSMFSLCSSLSISFNSSKHFHLYG:1069 : * * * ** * * * *** * * * * * * * * * * * * *: 4nen_A_1 970:SHP--QNPSLRCSSEKIAPPASDFLAHIQKNP-VLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKV-SVVSVAEITFDTSVYSQLPG:1065 SecStr :E S--SSTT EEEEEE HHHHHHHS -EESTTTSEEEEEEEEEEEE TT EEEEEEEEEEESGGGGGTT SEE-EEEEEEEEEE TTTEEE TT: ExpBur :ebe--eeeebeeeeeeeeeeeeebeeebeeee-bbeeebbbbbebebebeebbbeebbbbbbebebbbbbbeebeeeeb-ebbbbbebebeeeebebeee: queryA 1070:SNA:1072 : *: 4nen_A_1 1066:QEA:1068 SecStr : GG: ExpBur :eee: |