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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [929 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | E 1 (E) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 399V(A) 400R(Q) 432R(M) 434L(Y) 447Q(S) 448V(L) 450T(N) (identity: 0.0 %/29.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4g1m_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425 :** * * * * * * * * * * * **** * ** *: 4g1m_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244 SecStr :SS STTTTTT TTSEEEE TTSEEEEEETTHHHHTBEEEEEEHHHHHHT TT SS TT EE GGG S BTSEEEEE SSSS EEEEEET: ExpBur :eebebebbbebebbebbebbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbbbbbbbebeeeeebbbbbbbb: Contact : bb b queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518 :* * * * * * * *** * * ****** * * * * * * * : 4g1m_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337 SecStr :THHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE SSS EEE EEEEEEE TTS EEEEEEE SSTT--: ExpBur :ebeeebbbbbbbb----beebeeeeebebebeebebbbbbbbbbbbeeeebbbb-bbbbebebebeeeeeebbbbbbbbbbeeebebeeeebebeeee--: Contact : b b bb b queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605 : *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** : 4g1m_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430 SecStr :S TTSEEEEEE TT SSS EEEEEETT SGGG EEEEEEEETTEE SS SEEEE ------- SSS TTSEEEEEE TT SSS EEEEEEGGGT: ExpBur :bebbbbbbebebbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbeeeeebebeb-------eeeeeeeebbbbebbebebebbebebbbbbbbbbbbb: queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697 : * *** * ** * * * * * * ** ** ** * * : 4g1m_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525 SecStr :EEEEE B EEEEEEEEEEE SEE TT EE SSSS EE EEEEEEEEEE SSS S-----EEEEEEEEEESTTS SSS EEETTT SSEEEEEE: ExpBur :ebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebee-----ebebebebebbeebeeeeeebbbbbeeebbeeeeeb: queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790 : * * * * ** * * * * *** * * * **** * * ** : 4g1m_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614 SecStr :EEESSS EEEEEEEEE TTT SS EEEEEEE -------- TTTS TT EE TTS SEEEEEEEE S-- TTTT EEEEE - : ExpBur :ebeeeeeeeeeeeebbbeeeeebeeeeebbbbbbebeb--------eeeebeeeeebbbeeeeebeeeeeeebbbbee--beeeeebebebebebe-eee: queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890 : * * * ** * * * * ** * * * * *** * * : 4g1m_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709 SecStr : EETTSEEEEEEEEEEEE SS BTTEEEEEE TTEEEEEE- S TTSB EEEEE TT--- EEEEEEETTB- TT EEEEEEEEEEE SS S: ExpBur :eebebbeebebebebebbbeeebbbebebbbebbeebeeebb-beeeeebeebebeeeeeee---eebbbbebeebb-eeeeeeebbbebbbebeeeeee: queryA 891:SVELHANVTCNN: 902 :** *: 4g1m_A_1 710:SVKFDLQIQSSN: 721 SecStr :EEEEEEEEE S : ExpBur :bbebebebebeb: |