#WARNING:no index is registered index "YP_009725308.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725308.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [572 aa] | Helicase :R1AB_SARS2 | |
2 | b | C 1 (A) | non-polymer(VWY) | N-ethyl-4-[(methylsulfonyl)amino]benzamide | 6V 21R 23P 129R 132L 133F 136E 235L 236S (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5rmd_A_1 identity=96.6% |
queryA 1:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGS: 100 :********************************************************************************************** : 5rmd_A_1 1:AVGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKXXXXXX: 100 SecStr : EE TTT EES EESSSTT B HHHHHHHHTTSS EESSSBS STT GGGEEEETTEEEETTT SSEEESEETTEE S ------: ExpBur :eeeebebeeeebbbebbebeeebebbbebbeebbeebebeebbbeeebebebeebeeeebeebeebeeebebeeeeeeebeebbeeeebebeee------: Contact : b b b queryA 101:DNVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTF: 200 : *********************************************************************************** *******: 5rmd_A_1 101:XXVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYXXXXXXXXQIGEYTF: 200 SecStr :-- HHHHHHHH S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHTTS EEEEE SSSEEEEEE TTS SSSS EEE -------- EEEE: ExpBur :--eeebbebbebebbebebbebbbebeeebbbbbbbbbebebbeeeeebbebebeeeeeeeebbbeeeeeeeebeebeebebbbe--------ebeebeb: Contact : b bb b queryA 201:EKGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP: 300 :** **********************************************************************************************: 5rmd_A_1 201:EKXXXXDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYP: 300 SecStr :E ---- EEEEESS TT EEEE S SS B SS S S GGGGGGHHHHHHHHTBSEEEEE TTSSHHHHHHHHHHHST: ExpBur :ee----eebebeeeeeeebeeeeebebeeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeeebeebbebbbbbbbbbbebebebbbbbbbebbe: Contact : bb queryA 301:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG: 400 :****************************************************************************************************: 5rmd_A_1 301:SARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIG: 400 SecStr :T EEEE SSHHHHHHHHHHHHHHS GGGEEE SS S SSEES TTSSEEE GGG SEEEEEEEE GGG HHHHHHHHHHEEEEEEEEEE: ExpBur :ebbbbbbbeebebbeebbeebeebbeeeebbbbbeeeeeeebbeebeeeeeeebbbbbbbeebeebebebbbbbbbbebebbbbbbbbeebebebbbbbb: queryA 401:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL: 500 :****************************************************************************************************: 5rmd_A_1 401:DPAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFL: 500 SecStr : TTS TT BS GGGS HHHHHHHHT SEE EESSS HHHHHHHHHHHSTT EE S S EEEEE EEETTEEE HHHHHHHHHHH: ExpBur :bbbbbbbebebbeeeebebebbbbbbeebeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeeebbbeebbbbbeebb: queryA 501:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI: 592 :********************************************************************************************: 5rmd_A_1 501:TRNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEI: 592 SecStr :HH GGGGG EEEES HHHHHHHHHHH EEEHHHHTT EEEEEEE S SHHHH HHHHHHHHTTEEEEEEEEES HHHHHH SEE : ExpBur :eeeeebeebbbbbbbebbbebbeeebebeeebbeebbeeebebbbbbbbbeeeebeeebbbbbbbbbbeebbbbbbbbeebbeebebeeeee: |