[pdbjlvh2]Protein Model on 1r9s_D_1_N

Protein Model on 1r9s_D_1_N_1 (TEMPLATE: 1r9s )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query F)
1	a	F	D 1 (B)	polymer(polypeptide(L)) [1097 aa]	DNA-directed RNA polymerase II 140 kDa polypeptide :RPB2_YEAST
2	b		N 1 (R)	non-polymer(UTP)	URIDINE 5'-TRIPHOSPHATE	766R 769Y 987K 1020R

FOCUSED TEMPLATE

MODEL[1] TEMPLATE:1r9s_D_1

1r9s_D_1       1:XXXXXXXXXXXXXXXXXXXDESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLIXXXXXXXXXXXXXXXXXXXISFGKIYVTKP: 100
SecStr          :------------------- TTS   GGGHHHHHHHHHHHHGGGHHHHHHHHHHHHTHHHHHHSSS S  ------------------- EE   EEEEE:    
ExpBur          :-------------------eeeeebebeebbbbbbbbbeebebbbbbbebbbebbeebbeebbeeebeee-------------------eebbebeeeeb:    

1r9s_D_1     101:MVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG: 200
SecStr          :EEE SSS EEE  HHHHHHHT   EEEEEE EE ----------------------------- EEEEEEE  TTSSSSGGGT  HHHHHHHT  TT   :    
ExpBur          :bbeeeeeeeeebebbebbbbbbbbbbbbebebee-----------------------------ebebbbbbbbbebebbbbeebeeeebeeeebbeebbb:    

1r9s_D_1     201:GYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH: 300
SecStr          : SEEETTEEEE  EEEEE SS EEEEE  SSSSEEEEEEE    SSSS     EEEEEES TT SS  EEEE TT SSEEEHHHHHHHTT  STTHHHHH:    
ExpBur          :bbbbbebebbbbbbbbeebbbbbbbbeeeeebebbbbbebebebeeeeeeeeebebebebeeeeeeebbebbbeebeebbbbbbbbbbbebeeeeebbeb:    

1r9s_D_1     301:ICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGXXXXXXXXXKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDH: 400
SecStr          :H S TT HHHHHHHHHHHHHHTT  SHHHHHHH  --------- THHHHHHHHHHHHTSSTTT  SSS HHHHHHHHHHHHHHHHHHHTTSS    TT :    
ExpBur          :bbeeeebeebeebbeebbeebeebeeeeebbbebe---------eeeebeebeebbbebbbbbbeeeeeeeebbbbbbbbbbbbbbbbbbeeeeeeeebb:    

1r9s_D_1     401:FGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEXXXXXXXXLAINAKTITSGLKYALATGNWGXXXXXXXXXAGVSQVLNRYTYSSTLSHLRRTNT: 500
SecStr          :GGGEEEE HHHHHHHHHHHHHHHHHHHHHHHHHT   --------    THHHHHHHHHHHHH    ---------   SEE   SSHHHHHHHHTEEE :    
ExpBur          :bbbbbbbbbbebbbebbbebbeebbeebeeeeeeeee--------eebebebbeebbeebbeebebe---------eebbeebbbebbbbbbbbbbbbeb:    

1r9s_D_1     501:PIXXXXXXAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETL: 600
SecStr          :  ------   SS  GGGTTTB SS   SSTTTTTSEEB TT EE     SHHHHHHHHTTS EEGGG  GGG TT BEEEETTEE EEBS HHHHHHHH:    
ExpBur          :ee------eeeeeebebbebbbbebbbeeeeeebbbbbbbbbbbbbbeeebeebeebbeeeebeebeebebeebeebbbbbbbbbbbbbbeebeebbeeb:    

1r9s_D_1     601:RTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDXXXXXXXXXEYTWSSLLNEGLVEYIDAEEEES: 700
SecStr          :HHHHHSSSS TT EEEEEGGGTEEEEE  S  EEE  EE     SSSS   S  HHHHHHHHHHHHT ---------   HHHHHHTTSB  EEHHHHTT:    
ExpBur          :eebbbeeebebbbbbbeeeeeebbebbbbebbbbbbbbbbeeeeeeeeebbebbeeebeebeebeeee---------ebebebbbeebbbbbbbbbbbee:    

1r9s_D_1     701:ILIAMQPEDLEPAEAXXXXXXDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQ: 800
SecStr          :  EESSSGGGSS   ------   TTS        TT  EE S GGGGS HHHHT SSTTSS HHHHHHHHHHTTS  S S TTGGG   S EEEESS  :    
ExpBur          :beebeebeebbeeee------eeeeeeeeeeeeeeeebebbbbbbbbbbbbbbbbbbbbeebeeebbbebbbbbbebbbbbbebeeebbeeebbbbeeee:    
Contact         :                                                                 b  b                               

1r9s_D_1     801:KPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA: 900
SecStr          :  SEE TTTTTTTGGGS  SEEEEEEE   SS S TTEEEEEHHHHHTTTT EEEEEEEEE    S TT   EES    SS     SS  TTB TTSBB :    
ExpBur          :ebebbbebbebbebbebbbbbbbebbbbebeeebeeeebbbbebbbeebbbebbbbbbbebebeeeeeeeebebeebeeeeeeeeeebebeebeeebbbe:    

1r9s_D_1     901:PGVRVSGEDVIIGKTTPISXXXXXXXXXXXXXSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMP:1000
SecStr          :TT EE TT BSB EEE   -------------  EE   B  TT  EEEEEEEEEEETTTEEEEEEEEEEEE   TT EEE SSS EEEEEEEE TTTS :    
ExpBur          :eeeebeeebbbbbbbeeee-------------eeebebeebeeebebbbbeebeeebeeebebbbbbbebebebeeebebbbbbbbebebebebeeeebb:    
Contact         :                                                                                      b             

1r9s_D_1    1001:FTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD:1100
SecStr          :EETTS   SEEE TTSSTTTT HHHHHHHHHHHHHHHHT  EE  SSS   HHHHHHHHHHTTS TTSEE EE TTT  B SS EEEEEEEEEE S  GG:    
ExpBur          :ebeeeebbbbbbbeebbeebebebbebbbbbbbbbeeeeeebebbbeeeebeeebbeebeeeebeeebebebeeeeeeeeeeeebbbbbbbbbbbeebee:    
Contact         :                   b                                                                                

1r9s_D_1    1101:DKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAA:1200
SecStr          :GT    SS  B TTT  B SSTTTT      HHHHHHHHHTT HHHHHHHHTTSS  EEEEEESSS SS    BTTTTB   SSS  SSSEEEEEE HHH:    
ExpBur          :eeeeebeeeeeeeebeeebeeeeeebeeeebeeeeeebeeeeeeeebeeeebeeebeeebbbbeebbbbebeeeeeeeeeebeeeebeeebeebebebeb:    

1r9s_D_1    1201:KLLFQELMAMNITPRLYTDRSRDF----------------------------------------------------------------------------:1224
SecStr          :HHHHHHHHTTT      S SS  -:    
ExpBur          :bbeeeeeeeeeeebeeeeeeeee-:

Protein Model on 1r9s_D_1_N_1 (TEMPLATE: 1r9s )

Input Residue Numbers for Focused Sites