Protein Model on 7jm4_H_1_F_1 (TEMPLATE: 7jm4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(IRF5_HUMAN) H 1 (H) polymer(polypeptide(L)) [108 aa] Interferon regulatory factor 4 :IRF4_HUMAN
2 b F 1 (F) polymer(polydeoxyribonucleotide) [19 base] Interferon-Stimulated Response Elements 16R(K) 17L 49H 50A 51T(G) 52R(K) 57Q(R) 67W 71T(K) 73K 89N(R) 92C 96K (identity: 53.8 %/45.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7jm4_H_1 identity=45.3%
queryA        16:RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPY: 115
                : *  **  *  *  **** * * **  * *** **         *   *****   **  ** *  **  **  ******** **             **:
7jm4_H_1       5:KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPY: 104
SecStr          :SHHHHHHHHHHH  STT EESSTTS EEEEE    BTTB SSSTTHHHHHHHHHHTTS  TTTS   HHHHHHHHHHHHHH TTEEE TTT B SSSS E:    
ExpBur          :ebeebbbebbeeeebebbebeeeeeebbebbbeebbeeebeebebbebbebbbeeeeebeeeeeeeeeeebbeebeeebeebeebeebeeebeeeeeebb:    
Contact         :bb                               bbbb    b         b   b b               b  b   b                   

queryA       116:KIYEVC: 121
                :* *   :
7jm4_H_1     105:KVYRIV: 110
SecStr          :EEEEE :    
ExpBur          :bbbebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123