[pdbjlvh2]Protein Model on 5jer_G_1_H

Protein Model on 5jer_G_1_H_1 (TEMPLATE: 5jer )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:5]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IRF5_HUMAN)	G 1 (E)	polymer(polypeptide(L)) [234 aa]	Interferon regulatory factor 3 :IRF3_HUMAN
2	b		H 1 (G)	polymer(polypeptide(L)) [234 aa]	Interferon regulatory factor 3 :IRF3_HUMAN	270H(E) 292I(R) 296Q(G) 447N 448P(S) 449D(H) (identity: 16.7 %/35.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5jer_G_1 identity=35.2%

queryA       249:DLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQ--VRFPSPEDIPSDKQRF-YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVF: 345
                :  *    ****     *** * * **  *            *   *    *  * *     *     *    *  *  ** *   ** * * **  *   :
5jer_G_1      18:EFEVTAFYRGRQVFQQTISCPEGLRLVGSEV----------GDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTY: 107
SecStr          : EEEEEEESS EEEEEEE  TT EEEESS  ----------  SSS SEEEE       STTHHHHHHHHHHHTT TT EEEEEETTEEEEEE SS  EE:    
ExpBur          :ebbbbbbbeeeeebeeebebeebbbbbbeee----------eeeeeebeebebeebeeeeeeeebbeebeebbebbeebbbbebeebebebbbebebebe:    
Contact         :                     b                     b   bbb                                                  

queryA       346:WSGPCASAHDSCPNP-------IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFS-GELSWS: 437
                :*    *      **                 * *  *   ** *  *     *     ** ** **   *  * *  * ***   * * **   *  *  :
5jer_G_1     108:W----AVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEG-SGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSL: 202
SecStr          :E----EEE SS S  SS  SEE  SSS EEEEEHHHHHHHHHHHHHT-SS     EEEEEESS   TTS GGGSSEEEEEEEHHHHHHHHHHHHHHS SS:    
ExpBur          :b----bbbeeeebbeeebeeeebeeeeebebbebbebbeebbebbee-eeeebebbbbbbbeeebbeeeebeebbbbbbbbbbbbebbbebbeebeeeee:    

queryA       438:ADSIRLQISNPDLKDRMVEQFK: 459
                :     * ***         * *:
5jer_G_1     203:ENTVDLHISNSHPLSLTSDQYK: 224
SecStr          :EEEE   STT   EEEEHHHHH:    
ExpBur          :ebebebebeeeeebebebeebe:    
Contact         :         bbb

Protein Model on 5jer_G_1_H_1 (TEMPLATE: 5jer )

Input Residue Numbers for Focused Sites