[pdbjlvh2]Protein Model on 5jer_E_1_A

Protein Model on 5jer_E_1_A_1 (TEMPLATE: 5jer )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:5]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IRF5_HUMAN)	E 1 (A)	polymer(polypeptide(L)) [234 aa]	Interferon regulatory factor 3 :IRF3_HUMAN
2	b		A 1 (B)	polymer(polypeptide(L)) [10 aa]	Rotavirus NSP1 peptide	257R 311R(V) 313Y 316Q(H) 317L(V) 320V(C) 341Q(H) 343K(H) 345F(Y) 400G 401E 402E(S) 411K 413L (identity: 42.9 %/35.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5jer_E_1 identity=35.2%

queryA       249:DLEIKFQYRGRPPRALTISNPHGCRLFYSQLEATQEQVELFGPISLEQ--VRFPSPEDIPSDKQRF-YTNQLLDVLDRGLILQLQGQDLYAIRLCQCKVF: 345
                :  *    ****     *** * * **  *            *   *    *  * *     *     *    *  *  ** *   ** * * **  *   :
5jer_E_1      18:EFEVTAFYRGRQVFQQTISCPEGLRLVGSEV----------GDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWRAGQWLWAQRLGHCHTY: 107
SecStr          : EEEEEESSSSEEEEEEE  TT EEEE  S ----------  TTSSSEEEE       SSS TTHHHHHHHHTT TT EEEEEETTEEEEEE SS  EE:    
ExpBur          :ebbbbbbbeeeeebeeebebeebbbbbeeee----------eeeeeebeebebeeeeeeeeeeeebeebeebbeebebbbbbebeebebebbbebebebe:    
Contact         :        b                                                       b  b  bb  b                    b b b

queryA       346:WSGPCASAHDSCPNP-------IQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEWPDRKPREKKLITVQVVPVAARLLLEMFS-GELSWS: 437
                :*    *      **                 * *  *   ** *  *     *     ** ** **   *  * *  * ***   * * **   *  *  :
5jer_E_1     108:W----AVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVDLITFTEG-SGRSPRYALWFCVGESWPQDQPWTKRLVMVKVVPTCLRALVEMARVGGASSL: 202
SecStr          :E----EEE SS S  SS  SEE  SSS EEEEEHHHHHHHHHHHHTT-SS     EEEEEESS   TTS GGGSSEEEEEEEHHHHHHHHHHHHSTTSS :    
ExpBur          :b----bebeeeebbeeebeeeebeeeeebebbbbbebbeebbeebee-eeebbebbbbbbbeeebbeeeebeebbbbbbbbbbbbebbbebbeebeeeee:    
Contact         :                                                             bbb        b b                         

queryA       438:ADSIRLQISNPDLKDRMVEQFK: 459
                :     * ***         * *:
5jer_E_1     203:ENTVDLHISNSHPLSLTSDQYK: 224
SecStr          :EEEE   BSS   EEEEHHHHH:    
ExpBur          :eeebebebbeeeebebbbeebe:

Protein Model on 5jer_E_1_A_1 (TEMPLATE: 5jer )

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