Protein Model on 8jko_D_1_B_1 (TEMPLATE: 8jko )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(IRF5_HUMAN) D 1 (D) polymer(polypeptide(L)) [108 aa] Interferon regulatory factor 4 :F2Z3D5_HUMAN
2 b B 1 (B) polymer(polydeoxyribonucleotide) [19 base] GATA-Reverse 16R(K) 17L 49H 51T(G) 52R(K) 67W 71T(K) 73K 89N(R) 96K (identity: 50.0 %/45.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8jko_D_1 identity=45.3%
queryA        16:RLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPY: 115
                : *  **  *  *  **** * * **  * *** **         *   *****   **  ** *  **  **  ******** **             **:
8jko_D_1       4:KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQXYNREEDAALFKAWALFKGKFREGIDKPDPPTWKRRLRCALNKSNDFEELVERSQLDISDPY: 103
SecStr          : HHHHHHHHHHHT STT  BSSTTS EEEEE       -  TTTTTHHHHHHHHHTTS  TTTS   HHHHHHHHHHHHHH SSEEE GGG B SSSS E:    
ExpBur          :ebbebbbebbeeeebeebeeeeeeebbbebebeeeeee-eeeeeebebbeebbeeeeebeeeeeeeeeeebbeebbeebeeeeebeebeeebeeeeeebb:    
Contact         :bb                               b bb              b   b b               b      b                   

queryA       116:KIYEVC: 121
                :* *   :
8jko_D_1     104:KVYRIV: 109
SecStr          :EEEEE :    
ExpBur          :bbbebe:    


Input Residue Numbers for Focused Sites

ex) 2,15,123