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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | E 1 (A) | polymer(polypeptide(L)) [589 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | F 1 (B) | polymer(polypeptide(L)) [448 aa] | Integrin beta-6 :ITB6_HUMAN | 403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 37.5 %/32.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5nem_E_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 5nem_E_1 219:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSXYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 313 SecStr : BTSEEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT - EEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE TT EEE EE: ExpBur :ebbbbbbbbebeeeeebbbbbbbbebeeebbbbbbbb----beebee-eebebeeeebebbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact :b b b bb bb b b b b b b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** ** : 5nem_E_1 314:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 404 SecStr :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT SGGG EEEEEEB SSSB SS SEEEE ------- SSS EEE: ExpBur :bbbbbeeebeeeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbe: Contact : b b b bb b queryA 584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679 :* * * * * *** * *** * ** * * * * * * ** : 5nem_E_1 405:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDK: 499 SecStr :EEEEEE SS SSS EEEEEEGGGTEEEEE B EEEE EEEEESSEE TT SB TTSS B EEEEEEEE EE SSS S-----EEEEEEEEEEST: ExpBur :bbebebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeebebeeeeeebbbbebebbbebebeeebee-----ebebebebebbe: Contact : b queryA 680:HRTR-RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 5nem_E_1 500:LKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 559 SecStr :T SEEETTTTBSEEEEEEEEETTS EEEEEEEEE GGG S SS EEEEEEEEE: ExpBur :eeeeeebbbbbeeeeeeeeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |