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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [589 aa] | Integrin alpha-V heavy chain :ITAV_HUMAN | |
2 | b | N 1 (N) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 432R(M) 434L(Y) 447Q(S) 448V(L) 450T(N) (identity: 0.0 %/32.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4um9_C_1 identity=32.1% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 4um9_C_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSS EEE-EEETT EEE TT EEE EE: ExpBur :ebbbbbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebebbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact : b b bb b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** ** : 4um9_C_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTT SSS EEEEEETT SGGG EEEEEEEETTEE SS SEEEE ------- SSS TTS: ExpBur :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeebbbbbbbbbeeebbbeeeebebeb-------ebeeeeeebbbbe: queryA 584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679 :* * * * * *** * *** * ** * * * * * * * *: 4um9_C_1 407:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKXXG: 506 SecStr :EEEEEE TTSSSS EEEEEEGGGTEEEEEEE EEEEEEEEEEESSEE TTT EE TT S EE EEEEEEEEEEEESSS SEEEEEEEEESSTT -- : ExpBur :bbebebebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeeeebeeeeeebbbbebebbbebebeeebeeebebebebbbbeee--e: queryA 680:HRTRRRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 4um9_C_1 507:--AIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 563 SecStr :-- EEETTT SSEEEEEEEEETTS EEEEEEEEE GGG S SS EEEEEEEEE: ExpBur :--eeebbbbbeeeebebeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |