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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [598 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [310 aa] | Integrin beta-8 :ITB8_HUMAN | 403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 37.5 %/32.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6om2_A_1 identity=32.4% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 6om2_A_1 221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315 SecStr : BTSEEEEE SSSSSS EEEEEETTTGGGT EEEEE ----TTT EEEEEE SSTTS TTS EEEE SSSSSS EEE-EEETT EEE TTS EEE BEE: ExpBur :ebbebbbbbebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbbbbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb: Contact :b b b bb bb b b b b bb bb b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 6om2_A_1 316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406 SecStr :EEEEE TTS EEEEEEE SSTT--S BTSEEEEEE TT SSS EEEEEETT SGGG EEEEEEEETTEE SS SEEEE ------- SSS TT: ExpBur :bbbbbeeebebeeeebebeeee--bebbbbbbebebbbeeeeebbbbbbbbbbeeebbbbbbbbbeeebbeeebbbebeb-------ebeeeeeeebbbb: Contact : b b b bb queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLD: 678 : * * * * * *** * *** * ** * * * * * * **: 6om2_A_1 407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLD: 501 SecStr :SEEEEEE SSSSSS EEEEEETTTTEEEEE B EEEEEEEEEEE SEE TT EE SSS EE EEEEEEEEEEEEESS S-----EEEEEEEEEES: ExpBur :ebbebeeebbebebbbbbbbbbbbbebbbbbbbbbbebeeebebeeeebebeeeebebeeeeeebbbbebebbbebeeeeebee-----ebebebebebb: Contact :b b queryA 679:GHRTR---RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733 : ** ** * * * * * * ** *: 6om2_A_1 502:KLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564 SecStr :TTS SSS EEETTT SSEEEE EEETT EEEEEEEEE GGG SS EEEEEEEEE: ExpBur :eebeeeeeebbbbbeeeebeeeeebebeeeeeeeeeebebbbeeeeebeeeeeebbbbbebeb: |