#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [899 aa] | nsp12 :A0A0U2C263_9ALPC | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [114 aa] | nsp8 :A0A1Z2R8Q6_9ALPC | 261L(I) 263K(E) 265Y(F) 267K(S) 271L 272K(E) 273Y 324T 325S(A) 328P 329L 330V(C) 331R 332K 336D 338V 339P 340F(L) 368F(I) 371L 372L 375A(C) 378P 379A 380M(L) 381H(L) 383A 384S 385G(S) 386N(P) 387L(A) 388L 389L(V) 391K(Q) 392R 396F 398V 509W(F) 514L 515Y 517D(E) 518S 675V(L) (identity: 53.5 %/59.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8g6r_A_1 identity=59.5% |
queryA 6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105 : **** * ***** ** ** * ********* ** **** ** * * * **** * * ** ** * * *** **** : 8g6r_A_1 3:AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD----AFYVVKRCTKSAMEHEQSIYSRLEKCGAVAEHDFFTWK: 97 SecStr :HHHHHHHHHHTT EEES-STTS EEEE EE SS EE SEEEE SEEEEEESSSSS---- EEEEE GGGHHHHHHHHHHHHTSTTB EEEEEEE: ExpBur :ebbeebeeebeeebeee-eebebeeeebbbbeeeeebbbbbebeeeebbbbebeeeeb----bbbbbbeeeeeebeebeebbeebeebebbbebbbbeee: queryA 106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205 : * ** *** ** **** *** *** ** ** * *** * * * *** ** **** ** * * ** * ***** ***** : 8g6r_A_1 98:DGRAIYGNVCRKDLTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVSRAMLKCVKFCDAMVEQGIVGVV: 197 SecStr :ETTEEEEEEEEEEE SSBHHHHHHHHSS SSS HHHHHHHHHHTSS GGGGGSTTTT TTT THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT BEE : ExpBur :eeeeebbbbbbbebbbbbbbbbbbbbbebebeebeebebbbeeeebbeeebbeeeebbbbbebeebbebbeebbebbbebbeebbebbebbeeebbebeb: queryA 206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304 :********* ****** * * * **** ** * * * * * *** ***** ** ***** ****** * * : 8g6r_A_1 198:TLDNQDLNGDFYDFGDFTCSIKGMGIPICTSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE: 297 SecStr : GGGBBTTS B TT B STT EE HHHHHHHHHHHHHTTTTGGG S S SSSSS TGGGG HHHHHHHHHHH TT S SSGGG SH: ExpBur :bbbbbbbebbbbebeebeeeeeeebebebebbbbbbbbbbbbbebbeeeeeeeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebeee: Contact : bb b b b bbb queryA 305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404 : ** ****** **** * * **** ** **** * **** ** * * * * * *** *** ** * * ** ******* : 8g6r_A_1 298:QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNXXXXXXSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTG: 397 SecStr :HHHHHHHHHHHHHHTTS TTT EEEEEEEEETTEEEEEEEEEEETTTEEEE SS ------ HHHHHHHHHSHHHHHHTS B SS SS EEEE TT : ExpBur :bebbbbbbbbbbbbebbeeebbbebeeeeebeeeebebbbbbbbbbbbbbebeeee------eebeebbbebbbbeebeebeebebeebebebebbbeee: Contact : bb bbbbb b bbb b bb b bbbb bbbbbbb bb b b queryA 405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504 : ****** *** **** *** *** ******** * ** * ****** ** ** * * * *** * **** * * * ** **** : 8g6r_A_1 398:MTNQTVKPGHFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKGDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGY: 497 SecStr : EE HHHHHHHHHHTTT S SS B TTHHHHHHGGGGG HHHHHHHHHHHHHTTSSS GGG S S H: ExpBur :eeeeebeeeeebeebeebbeeeebbeeeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbebbeebebbebebeebeeeeeeeebbb: queryA 505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604 :* ** *** *** * *** ** * ****** ** ** ******* * ***** *** **** ** *** **** **** ***** ****** **** : 8g6r_A_1 498:PLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN: 597 SecStr :HHHTT HHHHHHHS HHHHHHHHHHHTTS B EE BSSS EE B HHHHHHHHHHHHHHHHHHHH SSSB TT STTTHHHHHHHH: ExpBur :bbeeeeebbebbeebeeeebeebbebbeebbbbbbbebebeeebeeeeebebebebbbbbbbbbbbbbbebbeebeeeeebbbbeeeebeebbbbebbee: Contact : b bb bb queryA 605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704 : **** ************ *** * * ******* ** ** ** **** * * * * ***** *************** *** ***: 8g6r_A_1 598:LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANV: 697 SecStr :HHSS SSEEEEE TTHHHHS TTHHHHHHHHHHTT TTTS HHHHHHHHHHHHHHHTS EE TTEEEE SS TTSTTHHHHHHHHHHHHHHHHHH: ExpBur :bbeebeeebbbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeebbbbbbbbbbbbbbbbbbbbbbbbbbbebbbbeebebbebbbbbbbbbbbbbbbb: Contact : b queryA 705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804 :* *** * * * ** **** ** ** ** * * ************** *** * *** * ** ** *********** *** * *: 8g6r_A_1 698:NKLLSVDSNVCHNLEVKQLQRKLYECCYRSTTVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPD: 797 SecStr :HHHHTS GGG HHHHHHHHHHHHHHTS SS HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS HHHHHHHHHHTT S TTT EEES : ExpBur :bebbebebeebeeeebeebbbebbebbbeeeebeeebbeebbebbeebbbbbbebebbbbbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbebee: queryA 805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904 : ************ * *********** ** **** **** ** ********** ** * ** ** * * * : 8g6r_A_1 798:INKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLXXXXXXXXX: 897 SecStr :GGG S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESS S THHHHHHHHHHHHHHGGGGG SSHHHHHHHHHHHHHHHHHHHH ---------: ExpBur :eeebbeebeebebbebeeeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebbbebbbbbebebeeeeebbebbbebbeebeeee---------: queryA 905:VMLTNDNTSRYWEPEFYEAMY: 925 : * * ** **: 8g6r_A_1 898:XXXXXXXTAKFWDESFYANMY: 918 SecStr :------- HHHH HHHHHHHT: ExpBur :-------eeeeeeeeebeebb: |