CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | G 1 (A) | polymer(polypeptide(L)) [1084 aa] | Spike glycoprotein :Q5DIC5_CVHSA | |
2 | b | Y 1 (Y) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 269N (identity: 100.0 %/97.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7akj_G_1 identity=97.3% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :*********************************************************** ****************************************: 7akj_G_1 1:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 100 SecStr : TT EEEE TT B SS S EEEEEEEE TT EEEEEEE TT EE TT EEEEEEESS EEEEEEESS SSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeeeeebeebbbbbebebebbebeeeebbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 7akj_G_1 101:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 200 SecStr : SS EEEEE EEEEEEEEE TTT EEEEEEES S EEE SS EEEEEEEEEETTEEEEEEEEEE SS BE: ExpBur :eebeebebebbbbebbebbbbbbeeeeeeeeeeebeeeeeeeeeeeeeeeeeeebeeeeeebeebebbbbbeeeeebbbbebeeeeeeeeebbeeeeebe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** *************************************************************************: 7akj_G_1 201:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 300 SecStr :EEEEE EEEEEEEEE ---- B EEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S SEEEEEEEEEE EEE : ExpBur :eeeebebeeebeebbbbbbbbe----eeebeebbbbbbebeebebbbebeeebebeebbbbebebbbebebeeeeeebeeeeeeeeebebeeebebbbbe: Contact : b queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 7akj_G_1 301:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 400 SecStr : B THHHHT S GGG EEEEE S B SHHHHS S SEEEE SS GGGGGG EESEEEEEEEEEEGGGGGGSSTT SHHHHTT TT : ExpBur :eeeeebebeebeeeeebeebebbeeeebeebeeebeeeeeeeeeeeeeeeebebeebbeebbbbbebbbbbbbbeeeebbeeeeeeebbbebbebeeebe: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 7akj_G_1 401:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 500 SecStr :EEEEEEE HHHH SS EEEEEEE SS TT B TTSS TTSTT B SEEEEEE TT TTTSEEEEEEEEEE SS EE : ExpBur :bbbbbbebeeebbeeebeeebeebeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeeebbeeebeeeebbbbbbbbebeeeeeebbbbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 7akj_G_1 501:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 600 SecStr : TTSEEEEESSS EEEEE EE TT EEE GGG EEEEE TTT EEE EEEEEEEE TTT EEEEET HHHHHHHHGGG EES: ExpBur :ebeeeebbebbbbeeeeebebeeeeeebeeeebeeeeeeeeeebbebeeeeebbebeebeeebbbbbbbbeeebeebbbbbeebebeebeebeeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 7akj_G_1 601:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 700 SecStr : SS S EEEETTEEEES EE S SEEEETTEEEEEEE ------- EEEEEEE S SSEEEEEEEEEEEEEEEEEE EE: ExpBur :ebeeeeeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeeee-------eebbbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 7akj_G_1 701:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 800 SecStr :E HHHHHTTT STTHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSS S HHHHHHHHH ---------: ExpBur :bebeebbbeebeebeeebeeeeeebeebeeebeebbebbeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbebbeeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 7akj_G_1 801:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 900 SecStr : BB ------ B TT EEE SS HHHHHHHHHHHHHHHHHTTTGGGSSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeeee------eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeeeebeeebbeeeeeebbeebeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 7akj_G_1 901:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1000 SecStr :HHHHH SGGGHHHHHHHHHHHHHHHHHHHGGG TT S S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeebeeebeebeebeeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 7akj_G_1 1001:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1100 SecStr : STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEE S EEETTEEEEESSSEEEE SSSEEEE SSS B BGGGEEE S GGGSSS EE : ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbeeeeebebbbeeeebeeebbeeebeeeeebeeeeeeeee: queryA 1118:TVYDPLQPEL:1127 :**********: 7akj_G_1 1101:TVYDPLQPEL:1110 SecStr : B TTTTT : ExpBur :ebeeeeeeee: |