CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
FOCUSED SITES | template(7sg4_C auth_asym_id:C) | ||||||
SiteNum | AA | label_ seq_id |
auth_ seq_id |
AA | Sec | Exp/Bur | RelAcc |
910 | N | 910 | 910 | N | H | e | 20.6 |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1095 aa] | Spike glycoprotein :SPIKE_SARS |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7sg4_C_1 identity=99.8% |
queryA 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134 :****************************************************************************************************: 7sg4_C_1 35:SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCD: 134 SecStr : S EE SS SSEEEEEEEEE TT EEE SSS EE TT EEEEEEESS SS EEEEESSSSSSS EEEEEE SSSEEEEEE GGG: ExpBur :ebebbbbbbeeeeeeeeeeebebbbbbbeeebeeeebeeeeeebeebebeebbbbbbbbbebbbbbbbbbeebeeeeebbbbbbbebbbbbbbbbbbbee: queryA 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234 :****************************************************************************************************: 7sg4_C_1 135:NPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAI: 234 SecStr : TT B STTBTTTB B TT S EEEEEE S TTHHHHSSSSSSSEEEEEEEEEETTEEEEEEEEEE SSTTS EEEEEEEE EEEEE: ExpBur :ebeeeeeeeeeeeeebbbbeebeeeeeeeebeeebeebeeeeebbebbbbbbbbeeeeebbbbbbbeebeebeebeeeebbbeeebebebebebeebebb: queryA 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334 :****************************************************************************************************: 7sg4_C_1 235:LTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF: 334 SecStr :SSSS TTTTT EEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT S SEEEEEEEEE SEEEE B STHHHHH SS : ExpBur :bbbebbeeeeeebbbbbbbbbebeebebbbebeeeeebeebbbbeeebbbebebeeeebebeebeeebeebeeeeeeebbbeeeeeeebebeebbeeeeb: queryA 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434 :****************************************************************************************************: 7sg4_C_1 335:PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTG: 434 SecStr : TTT EEEEE SEE HHHHHT SB BSSS HHHHTT BSEEEEEEEEE GGGGGTSSSS HHHHTTT TTS EEEEEEGGGTT TT : ExpBur :bbbeebeebebeebbbebeebbeeeebebeeeeeeebeebbeeebbbbbbbbbbbebebeeebbbeeebebbbbbbbbeeebebbbbbeebeeebeeeeb: queryA 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534 :****************************************************************************************************: 7sg4_C_1 435:NYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTG: 534 SecStr : SSSB S SS SSS S S STT SSSTTS B TTS TTT EEEEEEEEE SS EES SSEEEEE SS EE: ExpBur :beebbbbbeeeeeeeebbbebeebbbbeeeeebeeeeeebeebbeebbbeeebeebeebbbbbbbbbeeeeeeebbbbeeebeeeeeeebbebebeeeee: queryA 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634 :****************************************************************************************************: 7sg4_C_1 535:TGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAG: 634 SecStr :EEEEEE TT EEE TT EEEEE SSS EEEEE EEEEEEEE TTT S EEEEESS HHHH SSS TTSSSTT SSEEEETTE: ExpBur :ebbbeeeeeebeeeeeebeeeeeeebbbbbbeeeebbebeebeebbbbbbbbbbeebebbbbbbeebebeebbeeeeeeeebbeeeeebbbbeeeebeeb: queryA 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734 :****************************************************************************************************: 7sg4_C_1 635:CLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANL: 734 SecStr :EEES EE SS SEEEETTEEEEEE GGGTTTT EEEEEE S TTEEEEEEEEEEEEEEEEEE EEEE HHHHHHTT HHHHHH: ExpBur :bbbbbbebeeeeeeebebeeebbbbeeeeeeeeeeeeebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebeebeeb: queryA 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834 :****************************************************************************************************: 7sg4_C_1 735:LLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICA: 834 SecStr :GGGG THHHHHHHHHHHHHHHHHHHHHHHHTT SS S EETTEE TTTSB TTSSSSSBHHHHHHHHHS SSS TTS TTT SS: ExpBur :beeeeeebeebeeebeebbebbbebbeebbeebeeebeeeeeeebebbebeebbbeeeeeeeebebbebbbebbbebeebeeeeeeeeebeebeeeeeeb: queryA 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934 :****************************************************************************************************: 7sg4_C_1 835:QKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVV: 934 SecStr :SSSSSEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHHHHHHH SGGGHHHHHHH: ExpBur :beeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeebeeebbeebeebbeebbeebeebbeebeebbebb: queryA 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034 :********************************* *****************************************************************: 7sg4_C_1 935:NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSF:1034 SecStr :HHHHHHHHHHHHTTT TTSS SSHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEE: ExpBur :eebbebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbbebeeeebbbeeebbbbb: queryA 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129 :***********************************************************************************************: 7sg4_C_1 1035:PQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDS:1129 SecStr :EEEETTEEEEEEEEEEEEEEEEEEE S EE SSSEEEESSSEEEE SSSEEEE SSS B BTTTEEEES TTSSTT EE B SSHHHHT : ExpBur :bbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbeeeeebbbbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeeeeeeeee: |