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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [962 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | T 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 1116N (identity: 100.0 %/88.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h15_C_1 identity=88.2% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** **************** ***********************************: 8h15_C_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEXXNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120 SecStr : EEETT EE SS S EEEEEEEE TTEEE B ------- EE SS EEEEE -- EEEEEEESSSSTTS EEEEEE SS EEEEEE : ExpBur :eebebbebbbbebeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbee--eebebbbbbeeeeeeeebbebeeeeeeebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :* ************ *********************** ***********************: 8h15_C_1 121:EXXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXXHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220 SecStr : ----------------------- S EEEE -------------- EEEEEEEEETTEEEEEEEEE ---- EEEEEEEE E: ExpBur :e-----------------------eeeeeeeeeeee--------------ebebbbbbeeeeebebbebebee----ebeeeeebbeeeeebebeeebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :****** *********************************************************************************: 8h15_C_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320 SecStr :EEEEE ------------- EEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT SS EEEEEEEEEEB EEE SB HHHHHS: ExpBur :bebeee-------------ebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbbeeeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :*********************************************************************************************** : 8h15_C_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTXXXXX: 420 SecStr : S GGG EEEEE SBB HHHHSSS SEEEEESS GGGTTT EESEEEEEEEEE STTSTTSSSS SSHHHHT TT EEEEEEE -----: ExpBur :eeebebbeebeeeebeebbbebbebeeeeebeeeeebeeeeeebbeebbbbbebbbbbbeeebbebbbbeeeebbbbebbebbeebebbbbbbee-----: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 : ****************** ***** ***************************************: 8h15_C_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYXXXXXXXXXXQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520 SecStr :------- EEE SS TT --------------------- EEE ---------- EEEEEEEEE SSS EE SS B EEET: ExpBur :-------eebbeeeeeebeeeeeee---------------------eeeee----------eebbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h15_C_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620 SecStr :TEE BEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEEE TTT S EEEEET HHHHHHHHHTT BSS SS S EEE: ExpBur :eeeeebebeeeeeebeeeebebeeeeeeeebbbbeeeeebbebeebeeebbbbbbbbbeebeebbbbbeebebeebeebeeeeebebebeeeebeeeeee: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ************************************************************: 8h15_C_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720 SecStr :ETTEEEES EE S SEE SSSEEEEEE -------- EEEEEE SSEEE EEEEEEEEEEE EEEE HHHHHTSS SH: ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :******************************************************************************** ****** : 8h15_C_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXXQYGECLXXXXXXX: 820 SecStr :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTSS SS HHHHHHHHHS ------- BEE -------: ExpBur :beebbeeeeebbeebeeebeebbebbbebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbbbbbeebee-------eebeee-------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 : ***************************************************************************************************: 8h15_C_1 821:XICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920 SecStr :- EE TT EEEE SS HHHHHHHHHHHHHHHHHHTTSSSSSS HHHHHHHHHHHTT THHHHHSHHHHHHHHHHHHHHHHHHHHTT HHH: ExpBur :-eeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :****************************************************************************************************: 8h15_C_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020 SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebbeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1121 :*******************************************************************************************: 8h15_C_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1111 SecStr :EEEEEEEETTEEEEEEEEEEE EEEEES EESSSEEEEESSSEEEE SSSEEEE SSS B STTEEEEEETTSSTT EE : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeebeeeeeeeeeebee: Contact : b |