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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1069 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | T 1 (T) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 778Y 783N 785S 786Q 914S (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crz_C_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crz_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S EEEESEEEEE SS S EEEEEEEE TTEEEEEEEE TT EE TT EEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeebeeeeeebbebbbbbbeeeeeeeeeeeeebbbbbbeeebebbbbeeebbbbeebebeebbbbbbbbebbbbbbbbbbeebeeeebbbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crz_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEE SS EEEE TTT EEEEE SEEEEEEEEEE S SSB EEEEEEEEEETTEEEEEEEEE BSSS EEEEE: ExpBur :bebebeebebbbbebbeebbbbbbeeebebeebebeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebebebebeebbeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crz_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEEE --- SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS SEEEE EEE EEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************* ***********************************************: 6crz_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCXXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S B TTTTS S STT EEEEE SB SHHHHS SSBS B ---- THHHH BS EEEEEEEE STTTTTSSSS TTHHHHHT B SS : ExpBur :eebeeeebeebbebeebebbbebeeeebeebbbebebbeebeebeeeee----eebeeebeeeebebbbbbbbbebbeebeeeeeeebbbebbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crz_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEE TTTS BSS B S EEE SS BT B TTS TTSTT B SEEE BBSSS GGGS EEEEEEEE ------ B SS : ExpBur :bbbbbebbeeebbeeebbeeeebbeebeeebeeeeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbbe------ebbbebeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crz_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEEEEBTTB EEEEEE TT EE SSSS EEE TTT EEEEE EE EEEEES TTT S EEEEET HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbbeebeebbbbbeebebeebeebbeeebbee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6crz_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE --------- EEEEEEE S SSEEEEE SEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebebbbbbebeebeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crz_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E SHHHHTSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTS SS HHHHHHHHH --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeebeeeebebbebebbbbeeeeeeeebebbebbeeebe--------: Contact : b b bb queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :********* ***************************************************************************************: 6crz_C_1 805:QYGECLGDIXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B EE ---- EE SSSEEE SS HHHHHHHHHHHHHHHTTTTHHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeeeeee----eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe: Contact : b queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crz_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH SSSHHHHHHHHHHHHHHHHHHHTTS TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeeebeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crz_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : SSSTTSSSEEEE B SSEEEEEEEEEEE EEEEEEESEEEETTEEEEESSSEEEE SS EEEE SSS B TTSEEEEEESSSSSSEE : ExpBur :bbeeeebbbebebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbebeeebbeeeeebbbeeeeeebbbeeebebeeebeeebbeeeeebeeeeeebee: queryA 1118:TVY:1120 :***: 6crz_C_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |