Protein Model on 8ajl_C_1_QA_1 (TEMPLATE: 8ajl )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) C 1 (B) polymer(polypeptide(L)) [1109 aa] Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4
2 b QA 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 32Q 65N 617P (identity: 100.0 %/87.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8ajl_C_1 identity=87.6%
queryA        19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112
                :* *      ** **  ** ******* ***** * **** **** ****     *        * ** *** ** ********** *** ****  * **:
8ajl_C_1       2:CGTLSNKSPPNMTQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNSDSDRIVRFDNPIIPFGDGVYFAATEKSNVIRGWIFGSTLDNTSQ: 101
SecStr          :    SS       EEEETT  EE  SS    S EEEEEEEE  TTEEEEEEEEE  SSGGG EE    EE  S EEEEEEESS  EEEEEEESS STTSE:    
ExpBur          :bbebeeebeeeeeeeebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeebeeeeebbbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeeb:    
Contact         :             b                                b                                                     

queryA       113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212
                :* ** ****  *** *** *** * **** * *    * *  ** *** ** *  * ****** ************* **** ** ** **** * ****:
8ajl_C_1     102:SAIIMNNSTHIVIRVCNFQLCDDPMFAVSRPTGQHYKTWIYTNARNCTYEYVSKSFQLDVSEKPGNFKHLREFVFKNVDGFLHVYSGYEPIDVARGLPSG: 201
SecStr          :EEEEEE SS EEEEEEEEEEEEEEEEEEESTT S  EEEEEEEE S  EEEE            SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS    :    
ExpBur          :bbbbbbbbebebbebbebebbebbbbbbeeeeebeeeebbeeeeeeeeeeeebeeeeeeeeeeeeebebbbbbbbbeeeeebbbbbeeeebeeeebbbee:    

queryA       213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312
                :*  ***************** * * ***    **  ***************** ************** ** **** ****   *********** *   :
8ajl_C_1     202:FSVLKPIFKLPLGINITNFRVIMTMFSPTTSNWGAEAAAYFVGYLKPTTFMLKFDENGTITDAVDCSQDPLSELKCTVKSFNVEKGIYQTSNFRVSPTKE: 301
SecStr          :  EEEEEEEE      SEEEEEEEEEESTTSS B  SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTTSS   SEEEE    S     E:    
ExpBur          :ebebeeebebebebebeebbbbbbbbbeeeeebbbeebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee:    

queryA       313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412
                :******************** *********  ** ************ ********** ********* *******************************:
8ajl_C_1     302:VVRFPNITNLCPFGEVFNATTFPSVYAWERTRISDCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFSSVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 401
SecStr          :EEE      B THHHHHT SS  BGGG EEEEE SEE  SGGGTTT   SEEEEESS TTGGGG EESEEEEEEEEEEGGGGGGSSTT  SHHHHHT   :    
ExpBur          :bbbbeeeeeebebeebbeeeebbbbebbeeeebeebbbbbeebeeeeeeeeeebeebeeeebebbbbbbbebbbbbbbeebbebbbeeeeeebbbebbeb:    

queryA       413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512
                :**** *** **** * ********** ** ****** ************* ******** *** *** ***  * *************************:
8ajl_C_1     402:PDDFTGCVIAWNTANLDATSTGNYNYYYRSLRHGKLKPFERDISNVPFSPEGKPCTPPAFNCYRPLNTYGFNPTVGIGYQPYRVVVLSFELLNAPATVCG: 501
SecStr          : TT  EEEEEEE HHHHSGGG S   EEE   SS   TT        B SSSS   SS TT B SEEE    TTS TTTSEEEEEEEEEE  SS   EE :    
ExpBur          :beebebbbbbbebbeebbeeeeeeebebbbeeeeebeeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeeebbbbbbbbbeeeeeebbbbb:    

queryA       513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612
                :***** * ******************* *************************** ********************* **************** *****:
8ajl_C_1     502:PKLSTELVKNQCVNFNFNGLTGTGVLTDSSKRFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTAIHA: 601
SecStr          :        TTSEEEEEETTEEEEEEEEE      TT  EEE TT  EEEEE TTT  EEEEE TT S EEEEE  TTT    EEEEET  TTTHHHHTTT:    
ExpBur          :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeeebbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb:    

queryA       613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712
                :******** **** ****************  ******************        *************  ****************** ********:
8ajl_C_1     602:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYSNNTIAIPTNFSISVTTEVMPVS: 701
SecStr          :TTS HHHHGGGSSSSEEEETTEEEES EE SS B  SEEEETTEEEEEE --------  EEEEEEB  S        TTEEEEEEEEEEEEEEEEEE  :    
ExpBur          :eebeeebeebbeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb:    
Contact         :    b                                                                                               

queryA       713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812
                :******** ********** ********************* *** ****************  * ************* ********************:
8ajl_C_1     702:MAKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDKNTREVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 801
SecStr          :  EEEE HHHHHHTT HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT S      S  EETTEE TTTSB TTSSS  BHHHHHHHHHS  TT:    
ExpBur          :bbbbbbebeebbbeebeebeeebeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebeebebeebbbeeeeeeeebebbbbbbeebeeeb:    

queryA       813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912
                :************** ********************** **************************************************************:
8ajl_C_1     802:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 901
SecStr          :SSS   GGGGS  GGG  HHHHHHHTTEEEE  SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHHT  THHHHTTHHHHHHHHHHH:    
ExpBur          :ebeebeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeebeeeebbebbbebbeebebeeebbeeeeeebbeebeeb:    

queryA       913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012
                :****************************************************************************************************:
8ajl_C_1     902:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1001
SecStr          :HHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbeebeebeeebeebbebbeebbebbeebbeebeeeeebebbebebbbeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe:    

queryA      1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112
                :****************************************************************** ************ ********************:
8ajl_C_1    1002:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVSGNCDVVI:1101
SecStr          :HHTSS   STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS   B  BTTTEEEEEETTSST:    
ExpBur          :ebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeebeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee:    

queryA      1113:GIINNTVYDPLQPELD:1128
                :****************:
8ajl_C_1    1102:GIINNTVYDPLQPELD:1117
SecStr          :T B    B TTGGGG :    
ExpBur          :eeeeeebeeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123