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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1048 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | O 1 (O) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 832I (identity: 100.0 %/94.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb7_C_1 identity=94.1% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :**** *********************************************** ****************************************: 6nb7_C_1 37:RCTTXXXXXXXXYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : -------- EEE TT EE SS SEEEEEEEEE TT EEEEEEEBTTB EE TTEEEEEEEESS EEEEESS STTS EEEEE: ExpBur :eeee--------eeebebbbebbbeeeeeeeeeeeeeeeebbbebeeebebbeeeeeeeeeeeeebeebbbbbbbbeeebebbeeebeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :******************** ******************** ***************************************: 6nb7_C_1 137:NNSTNVVIRACNFELCDNPFXXXXXXXXXXXHTMIFDNAFNCTFEYISDAFXXXXXXXXXXFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SSSEEEEEE B SS ----------- SBS S EEEE ---------- EEEEEEEEEETTEEEEEEEEEE SSS EEE: ExpBur :eeeebeeebbbbbbebeeee-----------eebebeeeeeeeeeeeeeee----------eeebbbebebeeeeeeebbbeebebebeeebeeeeeebe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************* ***********************************************************************: 6nb7_C_1 237:PIFKLPLGINITNFRAILTAFXXXXXXXXTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEEE SEEEEE -------- EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEEE : ExpBur :eeeeeebeeebebbbbbeeee--------eeeeebbebebeeeebbbbbbeebebeebbbbebbeebbbebeeeeeeeeebeeeeeebeeeeeeebebbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb7_C_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr :S B THHHHS S BSTT EEEEE SEE HHHHSSSS SEEEESSS GGGGGG BSEEEEEEEEEEGGGGGGSSTT SHHHHHT SS : ExpBur :eeeeeeeeeeeeeeeeeebbbebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebbbebeeebbbeeeeeebeeeeeeeebbebbbbeeeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 6nb7_C_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536 SecStr : EEEEEE TTTT BTT BTT EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SS EE : ExpBur :beeebbebbeeebeeeebeebbbbeeeeeebeeebeeeeeeebbeeeeeeeeeeeebeebeeebebbeeeeeebbbbbeeeeeeeeeeeeeebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb7_C_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : SSEEEEEETTEEEEEEEEE TT SEEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEET HHHHHHHHHTT EES: ExpBur :eeeeeebbebeeeeeeeebbbeeeeeeebeebeeeeeeeeeeebbebebeeebbeeeebeeebbbbbebbeeebeeebbbeeebebeeeeebeeeebeee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** ***********************************************: 6nb7_C_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EE S SEEEETTEEEEEEE ------- EEEEEEE S SSEEEEES EEEEEEEEEEE EEE: ExpBur :eeeeeeeeeeeeebeebbbbebeeeeeeeeeebeeeeebbebeeee-------eeebbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb7_C_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHH S TTTHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTSB TTSSS SBHHHHHHHTT ---------: ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebeebbeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbebbbeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ***** **************************************************************************************: 6nb7_C_1 837:XYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr :- BEE -------- EE SSSEEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHHHT HHHHHHTHHHHHHHHHHHHHHHH: ExpBur :-ebeee--------eeeeeeeebeeeeeebeeeebbeebbbbbbbbeebbebbeeeeeeeeebebbbbebbeeeebebebbeeeeebbbeebeebbeebe: Contact : b queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb7_C_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S THHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eeeeeeeeebeebbeeeeebeebeeebeeebeeeeebeebebeebeeeeeeeebeeebeebbebbbebbeebbeebeebbeebeebbeebbebbebbbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb7_C_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE SEEEETTEEEEESSSEEEEETTEEEEE TTS B BTTSEEEEEESSSSTTEEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeebebeebebbbeeebbeeeeeeebbeeeeeeebbeeeeeeeeebbeeebeeeeeeeeeeeeeee: queryA 1118:TVYDPLQPEL:1127 :**********: 6nb7_C_1 1137:TVYDPLQPEL:1146 SecStr : B TTTTT : ExpBur :ebeeeeeeee: |