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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1090 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
2 | b | NA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 32Q 65N 617P (identity: 100.0 %/82.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8aja_C_1 identity=82.6% |
queryA 19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112 :* * ** * ** ******* ***** * **** **** **** * * ** ** ************* *** **** * **: 8aja_C_1 2:CGTISNKTPPNMNQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNADSNRIVRFDNPILPFGDGIYFAATEKSNVIRGWIFGSTLDNTSQ: 101 SecStr : SB EEEESS EE SS SEEEEEEEEE TTEEEEEEEEEEEETTTEEEE EE S EEEEEEESS EEEEEEESS STTS : ExpBur :ebebeeeeeeeeeebebbebbbbbbeeeebbeeebebeeebbbbebebbbbbbeeeeeeeebbbbbeebebeebbbbbbbbbbbbbbbbbbbbebebeee: Contact : b b queryA 113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212 :* ** **** * *** *** * * ** * * ** *** ** * * ****** ************* **** ** * *** * ****: 8aja_C_1 102:SAIIVNNSTHIIIKVCNFQLCDDPMFTVSR--GQHYKTWVYTNARNCTYEYVSKSFQLDVSEKNGNFKHLREFVFKNVDGFLHVYSAYEPIDLARGLPSG: 199 SecStr :EEEEEEETTEEEEEEEEEEEEEEEEEEEET--TEEEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS S: ExpBur :bbbbbbbbeeeebbbbebebbebbbbbbbe--beeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebbbbbbbeeeeebbbbbbeeebeeeebbbee: queryA 213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312 :* **** ********* ** * *** * **************** ************* ** **** *** *********** * : 8aja_C_1 200:FSVLKPILKLPLGINITSFRVVMTMFSPTTSNWLAESAAYFVGYLKPTTFMLKFNENGTITDAVDCSQDPLSELKCTLKSFNVEKGIYQTSNFRVSPTQE: 299 SecStr : EEEEEEEE S EEEEEEEEEESSSSS B EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT SS SEEEE S E: ExpBur :ebebeeebebebebebebbbbbbbbbbeeeeebebbbbbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee: queryA 313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412 :************* ***** ********* *** ***** ****** ********** ** **** **** * *** ***************: 8aja_C_1 300:VVRFPNITNLCPFDKVFNATRFPSVYAWERTKISDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGQTGVIADYNYKL: 399 SecStr :EEE B HHHHHT S BGGG EEEEE SEE GGGGGGT SEEEEESS GGGGGG EESEEEEEEEEEEGGGGGGSSTT SHHHHHT : ExpBur :bbbbbeeeeebebeebbeeeebbbbbbbeeeebeebbbebeebeeeeeeebeebeebeeeebebbbbbbbebbbbbbbbebbebbbeeeeeebbbbbbeb: queryA 413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512 :**** *** **** ** ** ** * ** ***** ** * * * * * ** ******************: 8aja_C_1 400:PDDFTGCVIAWNTAKQDAG-----NYYYRSHRKTKLKPFERDLSN------------SDENGVRTLSTYDFNPNVPIEYQATRVVVLSFELLNAPATVCG: 482 SecStr : TT EEEEEEE TTT E-----EEEEE SS TT ------------B SSS B EEEEEE TTS GGGSEEEEEEEEEE SS EE : ExpBur :eeebebbbbbbebbeebee-----ebebbeeeeeebeeeeebeee------------eeeeeeeebeebebeeebeeeeebbbbbbbbbeeeebebbbbb: queryA 513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612 :***** * ************ ****** ****** ******* ********** * ************************************** *****: 8aja_C_1 483:PKLSTQLVKNQCVNFNFNGLKGTGVLTDSSKRFQSFQQFGRDASDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIHA: 582 SecStr : SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE TT S EEEEES TTT S EEEEET TTTHHHHTTT: ExpBur :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeebbbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb: queryA 613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712 :******** **** **************** ****************** ************* **** ** ********** ********: 8aja_C_1 583:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYANNSIAIPTNFSISVTTEVMPVS: 682 SecStr :TTS HHHHGGGSSSSEEEETTEEEESSEE SS B SEEEETTEEEEEE -------- EEEEEEB S TTEEEEEEEEEEEEEEEEEE : ExpBur :ebbeeebeebbeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbebbebebeeebbbbb: Contact : b queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812 :******** ******* ** ***************** *** *** ** ************* * ************* ********************: 8aja_C_1 683:MAKTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 782 SecStr : EEEE HHHHHH S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHTT S S EETTEE TTTSB TTSSSS BHHHHHHHHHS TT: ExpBur :bbbbbbebeebbbeebeebbebbeeeeeebeebeebbeebbeebbebbeebbeebeeeeeebeebebeebebeebbbeeeeeeeebebbbbbbeebeeee: queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912 :************** ********************** **************************************************************: 8aja_C_1 783:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 882 SecStr :S S TTTTS GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHHT HHHHHHTHHHHHHHHHHH: ExpBur :ebbeeeeeebeeeeeeeeebbebeeebbeeeeeebeeeebbbebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeebeeebbeebeeb: queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012 :****************************************************************************************************: 8aja_C_1 883:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS: 982 SecStr :HHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHHTT TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebeeebeeeeeebeebbebbeebbebbbebbeebeeeeebebbebebbbeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe: queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112 :****************************************************************** ************ ************ *******: 8aja_C_1 983:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVI:1082 SecStr :HHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS EE BTTTEEEEEETTSST: ExpBur :ebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbbbeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee: queryA 1113:GIINNTVYDPLQPELD:1128 :****************: 8aja_C_1 1083:GIINNTVYDPLQPELD:1098 SecStr :T EE B TTGGG : ExpBur :eeeeeebeeeeeeeee: |