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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1055 aa] | Spike glycoprotein :SPIKE_CVHSA | |
2 | b | LA 1 (l) | branched(oligosaccharide) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 325F 326G 330N (identity: 100.0 %/94.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6nb6_C_1 identity=94.8% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :***** ************************************************ ****************************************: 6nb6_C_1 37:RCTTFXXXXXXNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 136 SecStr : ------ EEEE TT EE SS SEEEEEEEEE TT EEEEEEEBTTB EE TT EEEEEEESS EEEEESS STTS EEEEE: ExpBur :eeeee------eeeebebbebebbeeeeeeeeeeeeebebebbbbeeebebbeeeeeeebeeebebeebbbbbbebeeeeebbeebbeeeeeeeebeeee: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :********************** ******************** **************************************: 6nb6_C_1 137:NNSTNVVIRACNFELCDNPFFAXXXXXXXXXHTMIFDNAFNCTFEYISDAFXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 236 SecStr :E SS EEEEEE EEEEEEE --------- EEEES S EEEE ----------- EEEEEEEEEETTEEEEEEEEEE SSS EEE: ExpBur :eeeebeebbbbbbbebeeebbe---------eeeebeeeeeeeeeeeeeee-----------eebebbbebeeeeebebbeeebeeeeeeebeeeeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** ***********************************************************************: 6nb6_C_1 237:PIFKLPLGINITNFRAILTAFSXXXXXXXTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 336 SecStr :EEEEEE SEEEEEEE ------- EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTT S SEEEEEEEEEE SEEEE : ExpBur :eeeeeeeeeebebbbbbeeeee-------eeeebbbbbebbebebbbbbbeebebebbbbbbbebbbbbebeeeeeebeebeeebeebebeeeeebebee: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 6nb6_C_1 337:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 436 SecStr :S B HHHHS S BGGG EEEEE SEE HHHHS SS SEEEESSS GGGGGG BSEEEEEEEEEEGGGGGGSSTT SHHHHHT SS : ExpBur :eeeeeeeeeeeeeeeeeebbeebeeeebeebbeebeeeeeeeebeeeeebeeeeeeeeeeebbbebebebbebeeeeebeeeeeeeebbebbebeeeeeb: Contact : bb b queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 6nb6_C_1 437:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 536 SecStr : EEEEEE TTTT BTT BTT EEE SS TT B TTS TTSTT B SEEE BBTTS GGGSEEEEEEEEEE SS EE : ExpBur :beeebbebbeeebeeeebeebbbbeeeeeebeeebeeeeeeebeeeeeeeeeeeeebeebeeebebbeeeeeebbbbbeebeeeeeeeeeeebeeeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 6nb6_C_1 537:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 636 SecStr : SSEEEEEETTEEEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT EEEEET HHHHHHHHHTT EES: ExpBur :ebbeeebbebebeebeeebbbeeeeeeeeeebeeeeeeeeeebbbebebeeebbbbeebeebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :*********************************************** ************************************************: 6nb6_C_1 637:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSXXXXXSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 736 SecStr : SS S EEEETTEEEES EEEEEEE SEEEETTEEEEEEE ----- EEEEEEEE S SSEEEEES EEEEEEEEEEE EEE: ExpBur :ebeeeeeeeeeeebeebbbbebbeeeeeeeeebebeeebbbbeeeee-----eeeebbbbeeeeeeeeeeeeeeeeeebeeebebebeeebbbbbbeebe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************* : 6nb6_C_1 737:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXX: 836 SecStr :E HHHHHSSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTSB TTSS SBHHHHHHHTT ---------: ExpBur :bebeebbbeebeebbebbeeeeeeeeebeeebeebbeebbebbeebbeebeeeeeeeeeeeeebbebeebbbeeeeeeeebebbebbeeee---------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ****** **************************************************************************************: 6nb6_C_1 837:XYGECLGXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 936 SecStr :- BEE ------- EE TTSEEEE SS HHHHHHHHHHHHHHHHHHGGGTTTSS HHHHHHHHHHHHT HHHHHHTHHHHHHHHHHHHHHHH: ExpBur :-ebeeee-------eeeeeebebeeeeeebeeeebbeebbbbbbbbeebbeebeeeeeeeeebeebbbebbeeeebeeebbeeeeeebbebbeebbeebb: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6nb6_C_1 937:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1036 SecStr :HHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S THHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebebbeeeeeeeebeeebbebbebbeebbeebbeebeeebeebeebbeebbebbebbbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6nb6_C_1 1037:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1136 SecStr : STTSS SSEEEEEEEEEETTEEEEEEEEEEE EEEEEE SEEEETTEEEEESSSEEEEETTEEEEE TTS B BTTSEEEEEESSSSTTEEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeeebbbbeebbeeeebbeeebeeeeebeeeeebeeb: queryA 1118:TVYDPLQPEL:1127 :**********: 6nb6_C_1 1137:TVYDPLQPEL:1146 SecStr : B TTTTT : ExpBur :ebeeeeeeee: |