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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1008 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | IA 1 (C) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 109N 131E (identity: 100.0 %/92.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h12_C_1 identity=92.0% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h12_C_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 116 SecStr : EEEE S EE SSS S EEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEEESSSSSSS EEEEEE SS EEEEEE : ExpBur :eebebbebbbbbbeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbeebeeeeebbebeeeeeeebbebbbb: Contact : b queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :** ************ ***************************************************: 8h12_C_1 117:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 216 SecStr : ---------------------- S EEEEE ------------- EEEEEEEEEETTEEEEEEEEE S SS EEEEEEEE S E: ExpBur :ee----------------------eeeeeeeeeeee-------------eebebbbbbeeeeebbbbebeeebeeeeebeeeeeebeeeeebebebebee: Contact :b queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :****** *********************************************************************************: 8h12_C_1 217:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316 SecStr :EEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTT HHHHHHHHHTSS SEEEE S EEEE S B HHHHHS: ExpBur :bebeee-------------ebbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeeebbeeeeebbbbbebeeebebeebbe: queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :********************************************************************* ******************************: 8h12_C_1 317:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 416 SecStr : S GGG EEEEE SSB SSTTT SEEEEESS GGGSSS B S EEEEEEEE GGGGGGSSSS SHHHHHT TT EEEEEEE TTT : ExpBur :eeebbbbeebeeeebeebbbebeebeeebeeeeeebeebeeeebeebbbbbbebbbbbbbbebbebbbbeeeeebbbebbbbbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h12_C_1 417:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 516 SecStr : SS B EEE SS TT B TTS TTSSS B SEEE B SSS GGGS EEEEEEE SS B SS BEEEES: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeeeeeebebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h12_C_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616 SecStr :S B BEEEE SS EE TTS EEE TTT EEEEE SS S EEEEES TTT S EEEEET TTSHHHHHTGGGS TTTSSSSSSS EEE: ExpBur :eeeeebbbeeeeeebeeeebebeeeeeebebbbbbeeeebbebeebeeeebbbbbbbeeeeeebbbbbeebebeebeeebbbeebeeebeebbeeeeebe: queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ***********************************************************: 8h12_C_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716 SecStr :ETTEEEES EE SS SEE SSSEEEEEE --------- EEEEEE S TT EEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************** *: 8h12_C_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXD: 816 SecStr :HHHHHTTSTTSSHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSS SS HHHHHHSS --------------------- : ExpBur :bbebbeeeeeebeebeeebeebbebbbebbeebbeebeeeeeebeebebebbebeebbbeeeeeeeebebbebbbebe---------------------e: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h12_C_1 817:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916 SecStr : SHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHB STTSSSS B HHHHHHHHHHTTT HHHHHHTHHHHHHHHHHHHHHHHHHHTT SSHHH: ExpBur :eeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbebbeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************** *************************************************************: 8h12_C_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016 SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebeeebeeebeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbbbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h12_C_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEE S EESSSEEEEESSSEEEE SSSEEEE SSS EE BTTTEEEEEETTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbeeeeebebbbebbbbeeebbeeebeeeeebeeeeeeeeeebeeee: |