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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (A) | polymer(polypeptide(L)) [1066 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | BA 1 (b) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 688A 1056N (identity: 100.0 %/96.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crx_C_1 identity=96.4% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crx_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEEE TT B S SEEEEEEEEE TT EEEEEEEBTTB EE TT EEEEEEESS EEEEESS SSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbbebeeeeeeebeebebebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crx_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEE EEEEEEEEEETTT EEEEEEES S EEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS BE: ExpBur :eebebebbebbbbebbebbbbbbbeeeeeeeeebbeeebeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbebeeebeeeeebeeeeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crx_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEEEEEEEE --- EEEE B EEEEEEEEE TTS EEEEEESSS HHHHHHHHHT SS SS EEEEEEEE EEE : ExpBur :eeeebebebebeebbbbbbbbbe---eebbbebbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbee: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6crx_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S B HHHHTT S GGG B EE SEE HHHHSSSSBS EE --- THHHH B SSEEEEEEEE STTSTT SSS TTHHHHHT B SSSB: ExpBur :eeeeebebeebbebeebebbbbbeeeebeebbbbbeebeeeeebebeebe---bebeeebeeeebebbbbbbbbebbebbbeeeeeebbbbbbebbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crx_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE HHHH BSS BTT EEE SS BT B TTS TTSTT B SEEE BBSSS GGG EEEEEEE ------ EE : ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebbbebeeeeeebbbbbbbbbbe------ebebeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crx_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : TTS EEEE SS EEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEE TTT S EEEEES HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeebbbebbeeeebbebeebeebbbbbbbbbeeebeeebbbbeebebeebeebeeeeebee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6crx_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EE S SEEEETTEEEEEE --------- EEEEEE S SSEEEEEEEEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebeebbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: Contact : b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crx_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E SHHHHTSS SHHHHHHTTT SHHHHHHHHHHHHHHHHHHHHHHHS SS S EETTEE TTTS TTSTT S HHHHHHTTTT --------: ExpBur :bebeebbbeeeeebeebbeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebebbbbeeeeeeebbebbbbbeeeee--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** **************************************************************************************: 6crx_C_1 805:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B B -------- B SSSEEE SS HHHHHHHHHHHHHHHHHHGGGGTTSS HHHHHHHHHHHTT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeee--------eeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebb: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crx_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHS S S HHHHHHHHHHHHHHHHHHHTTS TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crx_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : TTTTSSSEEEEE EEETTEEEEEEEEEEEEEEEEEEEESEEEETTEEEEESSSEEEE SS EEEE SSS EE SSSEEEEEESSSSTTEEE : ExpBur :bbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebbbbeeebbeeeebbeeebeeeeebeeeeebeee: Contact : b queryA 1118:TVY:1120 :***: 6crx_C_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |