Protein Model on 6crw_C_1_B_1
(TEMPLATE: 
6crw
)Protein Model on 6crw_C_1_B_1
(TEMPLATE: 6crw
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 42Y 44D 45E 46I 47F 48R 218P 223P 269N 719D 722M 727D 737Q 738Y 741F 747R 769Q 770M 771Y 772K 779F 824G 831L 835Q 836K 837F 838N 841T 844P 845P 846L 848T 851M 854A 855Y 865T 866A 868W 869T 872A 875A 876L 877Q 878I 879P 880F 882M 883Q 886Y 894T 895Q 896N 899Y 900E 902Q 945V 948L 984Q 987Q 1012S 1013E 1021R (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6crw_C_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6crw_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : S B EEEEESB B SS S EEEEEEEE TTEEEEEEEE TTB EE TTEEEEEEEESS EEEEESS STTS EEEEE:
ExpBur :eeeebeeeeebeeeebebbebbbbbbeeeeeeeeeeebeebbbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeeebbbbbb:
Contact : b bbbbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6crw_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEEEEEEEEEEEEEEBTTT EEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS B BE:
ExpBur :bebeebbbebbbbebbeebbbbbbeeebebeebebeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbeeebebebeeebeeeeebbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6crw_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE SEEEE B --- EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS SEEEE EEE EEE S:
ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe:
Contact :b b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************* ***********************************************:
6crw_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCXXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr :S B TTTTS S STT EEEEE SB SHHHHS SSBS B ---- THHHH BS EEEEEEEE HHHHTT SSS TTHHHHTT B SS :
ExpBur :eebeeeebeebbebeebebbbebeeeebeebbbebebbeebeebeeeee----eebeeebbeeebbbbbbbbbbebbeebeeeeeebbbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6crw_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEE TTTS BSS B S EEE SS BT S B TTS TTSTT B SEEE BBSSS GGGS EEEEEEEE ------ B SS :
ExpBur :bbbbbebbeeebbeeebbeeeebbebbeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbbe------ebbbebeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6crw_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SSEEEEEETTEEEEEEEEE TT EE SSS EEE TTT EEEEE EE EEEEES TTT S EEEEET HHHHHHHHHTT EES:
ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeebbbbbeeeeebbebeebbeebbbbbbbbeeebeebbbbbeebebeebeebbeeebbee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** **********************************************:
6crw_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS TT EEEETTEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSB EE SEEEEEEEEEEE EE:
ExpBur :ebeeeebeeeeeeeebbbbbebeebeeeeeeebebeeebbbbbeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6crw_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E SIIIIISS HHHHHHHGGG THHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTS SS HHHHHHTTT --------:
ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbeeeeeeeeeeeebebebbebebbbbeeeeeeeebebbeebbebbe--------:
Contact : b b b bb b b bbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:******* ***************************************************************************************:
6crw_C_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : BEEE ------ EEE SSSEEE SS HHHHHHHHHHHHHHHTTTTHHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :eebeeee------eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe:
Contact : b b bbbb b bbb b b bb bb bb b bbbbbb bb b bbb bb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6crw_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHH SSSHHHHHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbb:
Contact : b b b b bb
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6crw_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : SSSTTSSSEEEEEEEEE SSEEEEEEEEEEE EE EEESEEEETTEEEEESSSEEEE SS EEEE SSS B TTSEEEEEESSSSSSEE :
ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebeebbbbeeebbeeeeeebbeeeeeebbbeeebeeeeebeeebbeeeeebeeeeeebee:
Contact : b
queryA 1118:TVY:1120
:***:
6crw_C_1 1105:TVY:1107
SecStr : :
ExpBur :ebe:
|
[assembly_id:1]
[help]