Protein Model on 6acj_C_1_B_1
(TEMPLATE: 
6acj
)Protein Model on 6acj_C_1_B_1
(TEMPLATE: 6acj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 544R 545F 548F 549Q 550Q 551F 552G 553R 554D 555V 556S 557D 558F 559T 573I 574S 575P 576C 578F 600D 601V 632Q 633A 651P 653G 655G 681L 683A 684D 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 968K 984Q 988T 991T 995I 999E 1021R 1022V 1023D 1024F 1028G 1029Y 1061P 1071F 1072P 1074E 1075G 1076V 1089R 1103F 1110V (identity: 100.0 %/95.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acj_C_1 identity=95.9% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acj_C_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEEE TT SS SS EEEEEE TT EEEEB TT EE S EEEEEEESS EEEESSSSSSSBEEEEE:
ExpBur :eebeeeeeeeeeeeebebeebbbbeebeeeeeeeeeeeeebbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebebebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acj_C_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEESB S SSS TT S EEEE S SS EEEEEEEEEETTEEEEEEB SSS S E:
ExpBur :beeebbbbebbbbeebebbbbebeeeebebeeeebeeeeeeeeeeeebeeeeeebeeeeeebebbbbbbbbeeeeebbbbebebebebeeebeebebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acj_C_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE ---- S EEEEEE EEEEEEEEE SSSSEEEEEESSS HHHHHHHHHT SS SS EE BB EEEE :
ExpBur :eeeebeeeeebeebbebbbbbe----ebbbbebbbbbbebeebbbbbebbeebebeebbbbbbebbbbbebeeeeeebeebeeebeebebeeebebebee:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:* ***********************************************************************************************:
6acj_C_1 318:NXXXXCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : ---- TTTTTSSSS STT EEEEE SEE SHHHHT TTSSEEEE SS SSS TTS BEEEEEEEEEE GGGTTTSSSS SHHHHT SS :
ExpBur :e----eebeebbeeeebebbbbbeeeebeebebebeebeeeeebebeebeeeebeebeeeebbbbebbbbbbebebbebbbeeeeeebbbebbebbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:*********************************************************************************************** *:
6acj_C_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGXXXXT: 517
SecStr : EEEEEE TTTS SS EEE SS TT B TT S TTSTT B SEEE TTS STTS EEEEEEEEE SSSS EE ---- :
ExpBur :bbbbbbbbeeebbeeeeeeebeebeeeeeebeebeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbbeeeeeebbbe----e:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acj_C_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : TTS EEEE SS EE EEE TT SSS EEE TTS EEEE B EEEE SSS EEEESS SHHHHHHHTTT BSS:
ExpBur :eeeeeebbebebeebeeebbbeebeeebeeeeeebeeeeeeeebbebbeeeebebeeebbeebbbbbbbbeeeeeebbbbbeebebeebeebbeeeebeb:
Contact : bb bbbbbbbbbbbb bbbb b bb
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acj_C_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS EEE SSS EEES S SS BTTTB ------------- S SS B S EEEEEEEEEEE EE:
ExpBur :ebeeeeeeeebeebeebbbbebeeeeeeeeeebebeeebbbee-------------bbbbebbeeeeeeeeeeeeeeebbbebebebeebbbbbbbbbbe:
Contact : bb b b b b bbbbbbbbb bbb b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acj_C_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr : TTTSS S SHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHTTT SS S STT BTTB TTSSSSS HHHHHHHTTS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbebeeebeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acj_C_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TT EE SS HHHHHHHHHHHHHHHHSS S SSS SHHHHHHHTTTTT TTTTTTSHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeebeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acj_C_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS SSSHHHHHHHHHHHHHHHHHHHHHHS SSSS SSTTTGGGG STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS:
ExpBur :eebeeeeeebbebeebbeebbeeeeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebeebbeebbbb:
Contact : b b b bbb b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acj_C_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTSSSSSS EEEEEE SSEEEEEEEEEEE B SS SSSS SSS EETTTT EE SSS SSTTS TTS :
ExpBur :bbeeeebbeebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebeeeeeebeeebbeebeeeeeeebebee:
Contact : bbbb bb b bb bbb b b b
queryA 1118:TV:1119
:**:
6acj_C_1 1118:TV:1119
SecStr : :
ExpBur :be:
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