Protein Model on 6acd_C_1_B_1
(TEMPLATE: 
6acd
)Protein Model on 6acd_C_1_B_1
(TEMPLATE: 6acd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 544R 545F 548F 549Q 550Q 551F 552G 553R 554D 555V 556S 557D 558F 573I 574S 575P 576C 578F 600D 601V 632Q 633A 651P 652I 653G 654A 655G 656I 679M 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 693T 694I 695A 943T 946K 947Q 950S 951N 952F 953G 968K 984Q 988T 991T 995I 999E 1021R 1022V 1024F 1027K 1028G 1029Y 1051P 1061P 1071F 1072P 1074E 1075G 1076V 1089R 1103F 1105S 1110V (identity: 100.0 %/95.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acd_C_1 identity=95.9% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acd_C_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEEE TT B S S SEEEEEEEEE TT EEEEEEE SS EE S EEEEEEESSS EEEESS STT EEEEEE:
ExpBur :eebeeeeeeeeeeeebebeebbbbeebeeeeeeeeeebeebbbbbebebebbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acd_C_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEEEE S EE SSS S EEEEEEEE S SS EEEEEEEEEETTEEEEEEEE SSS BE:
ExpBur :beeebbbbebbbbeebebebbebeeeebebebebbeeeeeeeeeeeeeeeeebebeeeeeebebbbbbbbbeeeeebbbbebeeebeeeeebeeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acd_C_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE SEEEE EE ---- SEEEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SS EEEEEEEB EEEE :
ExpBur :eeeebeeeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbbbebbbbbebeeeeeebeebeeebeebebeeebebebee:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:* ***********************************************************************************************:
6acd_C_1 318:NXXXXCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : ---- HHHHS S STT EEEEE S TTTS SS SEEEESSS SGGGTT BSSEEEEEEEE GGGGGGSSSS SSHHHHT SSS :
ExpBur :e----eebeebbeeeebebbbbbeeeebeebebebeebeeeeebebeebeeeebeebeeebbbbbbbbbbbbebebbebbbeeeeeebbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:*********************************************************************************************** *:
6acd_C_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGXXXXT: 517
SecStr : EEEEEE TTTS SS S EEE SS TT TTS TTSTT SEEE TTS STTS EEEEEEE SSSS SB ---- :
ExpBur :bbbbbbebeeebbeeeeeeebeebebeeeebeeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeeebbbe----e:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acd_C_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : SS EEEE SS EEEEEEEE TT B SSS EEEEETTTEEEEEE EEEEEEE S SSS EEE SS SHHHHHHHHTT BSS:
ExpBur :eeeeeebbebebeebeeebebeeeeeebeeeeeebeeeeeeeebbebeeeeebebeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeeebeb:
Contact : bb bbbbbbbbbbb bbbb b bb
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acd_C_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS S EE SSS EES B SS SEEETTTEEE ------------- BEE SS B B EEEEEEE EE:
ExpBur :ebeeeeeeeebeeeeebbbbbbeeeeeeeeeebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebebebebebeebbbbbbbbbbe:
Contact : bb bbbbbb b bbbbbbbbbb bbb
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acd_C_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E TTTSSS S SSHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHT SS S STT TTTS SSSSSSS HHHHHHHHHS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acd_C_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHHTTTTT SHHHHTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeebbbeeeeeebeeeebbebbbbbbbbbbebbeebeeeebeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebb:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acd_C_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHHHHS SSSSSSTTTTTTS STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS:
ExpBur :eebeeeeeebbebeebbeebbeebeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:
Contact : b bb bbbb b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acd_C_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTTS SS EEEEEEETTEEEEEEE B B S SSSSEEE SS EETTTT EE SSS EE STT EEESSSSS :
ExpBur :bbeeeebbbebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeebbeebeeeeeeebebee:
Contact : bb b bbb b b bb bbb b b b b
queryA 1118:TV:1119
:**:
6acd_C_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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