Protein Model on 5x5b_C_1_B_1 (TEMPLATE: 5x5b )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) C 1 (C) polymer(polypeptide(L)) [1053 aa] Spike glycoprotein
2 b B 1 (B) polymer(polypeptide(L)) [1053 aa] Spike glycoprotein 42Y 45E 46I 47F 48R 51T 110K 112Q 160T 189N 190K 191D 192G 193F 217K 218P 219I 221K 223P 224L 225G 226I 227N 269N 719D 722M 727D 737Q 738Y 739G 740S 741F 744Q 746N 747R 750S 766Q 768K 769Q 770M 771Y 772K 779F 831L 835Q 836K 837F 838N 839G 844P 845P 846L 848T 851M 855Y 865T 868W 871G 872A 875A 876L 877Q 878I 879P 880F 882M 886Y 894T 895Q 896N 899Y 945V 948L 949S 958V 960N 963L 964S 965R 966L 967D 987Q 991T 994L 995I 1001R 1012S 1013E 1017G 1021R (identity: 100.0 %/96.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5x5b_C_1 identity=96.7%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :*********************************************************** ****************************************:
5x5b_C_1       5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr          :     S       EEEE SS  EE  SS    S EEEEEEEE  TT EEEEE  BTTB     EE  S EEE    SS    EEEEESSSSTTSEEEEE :    
ExpBur          :eeeebeeeeeeeeeebebbebbbbebeeeeeeeebeebebbbbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:    
Contact         :                        b  bbbb  b                                                          b b     

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
5x5b_C_1     105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr          :  SSEEEEEEEEE   SS    B SSS  B   TT S EEEEEEEEEEEE     S   SSEEEEEEEEEE  SS  EEEEEEEEEEESSS      EEE:    
ExpBur          :bebeebbbbbbbbebbebbbbebeeeebeeeeeebeeeeeeeebeeebeeeebebeeeeeebeebebbbbbeeeeebbbbebeeebebeeebeeeebbbe:    
Contact         :                                          b                            bbbbb                       b

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :**********************     *************************************************************************:
5x5b_C_1     205:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr          :EEEE        EEEEE   B ----     S  EEEEE EEEEEEEEE SSS EEEEEETTT HHHHHHHHHT SS  SEE          B     S :    
ExpBur          :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbeeeeebebbeb:    
Contact         :bb b bbbbb                                         b                                                

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :****************************************************************************************************:
5x5b_C_1     305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr          :SS EE STHHHHS S    STT EEEE  SEE  HHHHHHS   SB    SS HHHHTT   S  EEEEEEEEGGGSTTSSSS TTSSTTTSS   SSS :    
ExpBur          :eeeeeebbeebbeeeebebbbebeeeebeebbbebeebeeeeebeeeeeeebebeebeebbbbbbbbbbbbbebebbebbbbbeeeeebbebbbbbeeee:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :****************************************************************************************************:
5x5b_C_1     405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 504
SecStr          :  EEEEE TTTT  TT  TTS  B   SS   TT        B SS  B  TTSTT   SB      TTS GGGSEEEEEEEE   S SS  S  S    :    
ExpBur          :bbbbbbebeeebbeeebeeebebbeeeeeebeeeeeeeeeebbbeeeeebeeeeeebeebbeeebbeeebeeeebbbbbbbbbbeeeeeebbbbbeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :****************************************************************************************************:
5x5b_C_1     505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr          :   SSS B   TTS     B  B      TT  EE  TTS   EEE TTT  EEE B        EEE  TTT     EE  SS HHHHHTTTTTT SSS:    
ExpBur          :eeeeebbbebbbbeeeeebbbeeeeeebeeeeebeeeeeeeebbbbbbeeeeebebeebbeeebbbbbbbbeebeeebbbbbeeebeebeebeeeebbeb:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :*********************************************         **********************************************:
5x5b_C_1     605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr          :  SS    SS    SSS   SSB  S     SEE SSSEEEES  ---------   EEEE   S        SS  EEE  B   EEEEEEE    EEE:    
ExpBur          :ebeebeeeeeeeebeebbbbbbeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbb:    

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :********************************************************************************************        :
5x5b_C_1     705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr          :E HHHHHHSS HHHHHHHHTS STTTHHHHHHHHHHHHHTHHHHHHHTTSSS     S   SSS   TTS  TTT SSSS HHHHHHTTS  --------:    
ExpBur          :bebeebbbeebebbeebbeeeeeeeeebeebbeebbebbbebbeebbeebeeeeebbeeeebebbebebbbeeeeeeeebbebbebbbeeee--------:    
Contact         : b  b    b         bbbbb  b bb  b               b bbbbb      b                                      

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :             ***************************************************************************************:
5x5b_C_1     805:XXXXXXXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr          :-------------      TT EEEE  SS HHHHHHHHHHHHHHHHHT SHHHHSS     HHHHHHHHHHHHTS HHHHHHSHHHHHHHHHHHHHHHH:    
ExpBur          :-------------eeeeeeebbbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeebeebbeebbebbeebe:    
Contact         :             b   bbbbb    bbb b  b   b         b  b  bb  bbbbbb b   b       bbb  b                  

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :****************************************************************************************************:
5x5b_C_1     905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr          :HTTTSS SSSHHHHHHHHHHHHHHHHHHHTTS  SSSS S HHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS:    
ExpBur          :eebeeeeebeeebbebeeebeebeeebeeebeeeeebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbb:    
Contact         :                           b  bb        b b  bbbbb                   b   b  bb     b          bb   b

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1104
                :***************************************************************************************:
5x5b_C_1    1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1091
SecStr          :   STTTSSSSSEEEEEEEEETTEEEEEEEE  B  EEE EE SS   SSS  EESS   EEETTEEEEEETTEEEEEE  TTTEE :    
ExpBur          :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebeeebeeeeeeeeeeebbbbeeeeeebbbbebbebeeeeeeebbee:    
Contact         :   b

Input Residue Numbers for Focused Sites

ex) 2,15,123