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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (B) | polymer(polypeptide(L)) [1109 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
2 | b | AB 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 330N (identity: 100.0 %/87.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8ajl_C_1 identity=87.6% |
queryA 19:CTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINH------TFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQ: 112 :* * ** ** ** ******* ***** * **** **** **** * * ** *** ** ********** *** **** * **: 8ajl_C_1 2:CGTLSNKSPPNMTQFSSSRRGVYYPDDIFRSDVLHLTQDYFLPFNSNVTRYLSLNSDSDRIVRFDNPIIPFGDGVYFAATEKSNVIRGWIFGSTLDNTSQ: 101 SecStr : SS EEEETT EE SS S EEEEEEEE TTEEEEEEEEE SSGGG EE EE S EEEEEEESS EEEEEEESS STTSE: ExpBur :bbebeeebeeeeeeeebbebbbbbbeeeebbeeeeebeeebbbbebebbbbbbeebeeeeebbbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeeb: queryA 113:SVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSG: 212 :* ** **** *** *** *** * **** * * * * ** *** ** * * ****** ************* **** ** ** **** * ****: 8ajl_C_1 102:SAIIMNNSTHIVIRVCNFQLCDDPMFAVSRPTGQHYKTWIYTNARNCTYEYVSKSFQLDVSEKPGNFKHLREFVFKNVDGFLHVYSGYEPIDVARGLPSG: 201 SecStr :EEEEEE SS EEEEEEEEEEEEEEEEEEESTT S EEEEEEEE S EEEE SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS : ExpBur :bbbbbbbbebebbebbebebbebbbbbbeeeeebeeeebbeeeeeeeeeeeebeeeeeeeeeeeeebebbbbbbbbeeeeebbbbbeeeebeeeebbbee: queryA 213:FNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGD: 312 :* ***************** * * *** ** ***************** ************** ** **** **** *********** * : 8ajl_C_1 202:FSVLKPIFKLPLGINITNFRVIMTMFSPTTSNWGAEAAAYFVGYLKPTTFMLKFDENGTITDAVDCSQDPLSELKCTVKSFNVEKGIYQTSNFRVSPTKE: 301 SecStr : EEEEEEEE SEEEEEEEEEESTTSS B SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHTTSS SEEEE S E: ExpBur :ebebeeebebebebebeebbbbbbbbbeeeeebbbeebbbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbbeeeee: queryA 313:VVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 412 :******************** ********* ** ************ ********** ********* *******************************: 8ajl_C_1 302:VVRFPNITNLCPFGEVFNATTFPSVYAWERTRISDCVADYSVLYNSTSFSTFKCYGVSPTKLNDLCFSSVYADSFVVKGDDVRQIAPGQTGVIADYNYKL: 401 SecStr :EEE B THHHHHT SS BGGG EEEEE SEE SGGGTTT SEEEEESS TTGGGG EESEEEEEEEEEEGGGGGGSSTT SHHHHHT : ExpBur :bbbbeeeeeebebeebbeeeebbbbebbeeeebeebbbbbeebeeeeeeeeeebeebeeeebebbbbbbbebbbbbbbeebbebbbeeeeeebbbebbeb: Contact : b queryA 413:PDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCG: 512 :**** *** **** * ********** ** ****** ************* ******** *** *** *** * *************************: 8ajl_C_1 402:PDDFTGCVIAWNTANLDATSTGNYNYYYRSLRHGKLKPFERDISNVPFSPEGKPCTPPAFNCYRPLNTYGFNPTVGIGYQPYRVVVLSFELLNAPATVCG: 501 SecStr : TT EEEEEEE HHHHSGGG S EEE SS TT B SSSS SS TT B SEEE TTS TTTSEEEEEEEEEE SS EE : ExpBur :beebebbbbbbebbeebbeeeeeeebebbbeeeeebeeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeeebbbbbbbbbeeeeeebbbbb: queryA 513:PKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHA: 612 :***** * ******************* *************************** ********************* **************** *****: 8ajl_C_1 502:PKLSTELVKNQCVNFNFNGLTGTGVLTDSSKRFQPFQQFGRDVSDFTDSVRDPKTLEILDISPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTAIHA: 601 SecStr : TTSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE TT S EEEEE TTT EEEEET TTTHHHHTTT: ExpBur :eeeeeeeeeeebbebbbbbeeeebbbeeeeeebeeeebbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbbeebeebbbbbeebebeebeeebbb: queryA 613:DQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVS: 712 :******** **** **************** ****************** ************* ****************** ********: 8ajl_C_1 602:DQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGAENSIAYSNNTIAIPTNFSISVTTEVMPVS: 701 SecStr :TTS HHHHGGGSSSSEEEETTEEEES EE SS B SEEEETTEEEEEE -------- EEEEEEB S TTEEEEEEEEEEEEEEEEEE : ExpBur :eebeeebeebbeeeeebebebbbbbebeeeeeeeeeebebeeebbbbeee--------eebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbb: queryA 713:MAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAD: 812 :******** ********** ********************* *** **************** * ************* ********************: 8ajl_C_1 702:MAKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDKNTREVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLAD: 801 SecStr : EEEE HHHHHHTT HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTT S S EETTEE TTTSB TTSSS BHHHHHHHHHS TT: ExpBur :bbbbbbebeebbbeebeebeeebeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebeebebeebbbeeeeeeeebebbbbbbeebeeeb: queryA 813:AGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 912 :************** ********************** **************************************************************: 8ajl_C_1 802:AGFMKQYGECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA: 901 SecStr :SSS GGGGS GGG HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHHHT THHHHTTHHHHHHHHHHH: ExpBur :ebeebeeeebeeeeeeeeeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeebeeeebbebbbebbeebebeeebbeeeeeebbeebeeb: queryA 913:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1012 :****************************************************************************************************: 8ajl_C_1 902:ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMS:1001 SecStr :HHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebeebeeebeebbebbeebbebbeebbeebeeeeebebbebebbbeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbe: queryA 1013:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI:1112 :****************************************************************** ************ ********************: 8ajl_C_1 1002:ECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVSGNCDVVI:1101 SecStr :HHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEE SS EEEE TTS B BTTTEEEEEETTSST: ExpBur :ebbbbbbeeeebbbeeebbbbbbbbbbbbbbbbbbbbeebeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbbeeebbeeebeeeeebeeee: queryA 1113:GIINNTVYDPLQPELD:1128 :****************: 8ajl_C_1 1102:GIINNTVYDPLQPELD:1117 SecStr :T B B TTGGGG : ExpBur :eeeeeebeeeeeeeee: |