Protein Model on 8h15_C_1_A_1
(TEMPLATE: 
8h15
)Protein Model on 8h15_C_1_A_1
(TEMPLATE: 8h15
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [962 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [968 aa] | Spike glycoprotein :SPIKE_SARS | 301Q 304N 306R 368G 369V 370S 372T 373K 377L 383Y 417M 450P 451F 452E 453R 455I 502E 503L 505N 533T 535T 543K 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 555V 556S 557D 558F 575P 576C 577S 578F 600D 631T 632Q 651P 654A 655G 679M 681L 683A 684D 685S 687I 688A 689Y 690S 691N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 953G 988T 995I 999E 1021R 1022V 1023D 1028G 1029Y 1054E 1056N 1059T 1060A 1061P 1071F 1072P 1089R 1103F 1105S 1110V 1112I (identity: 100.0 %/88.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h15_C_1 identity=88.2% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** **************** ***********************************:
8h15_C_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEXXNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEETT EE SS S EEEEEEEE TTEEE B ------- EE SS EEEEE -- EEEEEEESSSSTTS EEEEEE SS EEEEEE :
ExpBur :eebebbebbbbebeeeebeeeeeebeeebbbbebebebee-------eeebebeebbbbbbee--eebebbbbbeeeeeeeebbebeeeeeeebbebbbb:
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:* ************ *********************** ***********************:
8h15_C_1 121:EXXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXXHLREFVFKNKDGFLYVYKGYQPIXXXXDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : ----------------------- S EEEE -------------- EEEEEEEEETTEEEEEEEEE ---- EEEEEEEE E:
ExpBur :e-----------------------eeeeeeeeeeee--------------ebebbbbbeeeeebebbebebee----ebeeeeebbeeeeebebeeebee:
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h15_C_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHT SS EEEEEEEEEEB EEE SB HHHHHS:
ExpBur :bebeee-------------ebbbbbebeebebbbebeeebebeebbbbebebbbbbbbeeeeeebeebeeebeebebeeeeebbbbbeeeeebebeebbe:
Contact : b b b
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*********************************************************************************************** :
8h15_C_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTXXXXX: 420
SecStr : S GGG EEEEE SBB HHHHSSS SEEEEESS GGGTTT EESEEEEEEEEE STTSTTSSSS SSHHHHT TT EEEEEEE -----:
ExpBur :eeebebbeebeeeebeebbbebbebeeeeebeeeeebeeeeeebbeebbbbbebbbbbbeeebbebbbbeeeebbbbebbebbeebebbbbbbee-----:
Contact : bbb bb b b b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ****************** ***** ***************************************:
8h15_C_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYXXXXXXXXXXQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT --------------------- EEE ---------- EEEEEEEEE SSS EE SS B EEET:
ExpBur :-------eebbeeeeeebeeeeeee---------------------eeeee----------eebbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebbbb:
Contact : bbbb b bb b
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h15_C_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEE BEEEE TT EEE TTS EEEEE TTT EEEEE EEEEEEEEE TTT S EEEEET HHHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebebeeeeeebeeeebebeeeeeeeebbbbeeeeebbebeebeeebbbbbbbbbeebeebbbbbeebebeebeebeeeeebebebeeeebeeeeee:
Contact : b b bbbb bbbbbb bbbb bbbb b
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h15_C_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr :ETTEEEES EE S SEE SSSEEEEEE -------- EEEEEE SSEEE EEEEEEEEEEE EEEE HHHHHTSS SH:
ExpBur :bebbbbbebeeeeeeeeeebebeeebbbbeee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact :bb b bb b b bbb bbbbb bbb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** ****** :
8h15_C_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXXQYGECLXXXXXXX: 820
SecStr :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTSS SS HHHHHHHHHS ------- BEE -------:
ExpBur :beebbeeeeebbeebeeebeebbebbbebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbbbbbeebee-------eebeee-------:
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: ***************************************************************************************************:
8h15_C_1 821:XICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :- EE TT EEEE SS HHHHHHHHHHHHHHHHHHTTSSSSSS HHHHHHHHHHHTT THHHHHSHHHHHHHHHHHHHHHHHHHHTT HHH:
ExpBur :-eeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb:
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:****************************************************************************************************:
8h15_C_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbebbeeeebbbeeeb:
Contact : b b b bbbb b b b bbb bb
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1121
:*******************************************************************************************:
8h15_C_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYD:1111
SecStr :EEEEEEEETTEEEEEEEEEEE EEEEES EESSSEEEEESSSEEEE SSSEEEE SSS B STTEEEEEETTSSTT EE :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebebbbeebbeeeebbeeebeeeeebeeeeeeeeeebee:
Contact : b b bbb bb b b b b b
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[assembly_id:1]
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