Protein Model on 8h11_C_1_A_1
(TEMPLATE: 
8h11
)Protein Model on 8h11_C_1_A_1
(TEMPLATE: 8h11
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [974 aa] | Spike glycoprotein :SPIKE_SARS | |
| 2 | b | A 1 (B) | polymer(polypeptide(L)) [992 aa] | Spike glycoprotein :SPIKE_SARS | 42Y 45E 46I 47F 112Q 191D 192G 193F 223P 225G 226I 227N 269N 270G 414D 719D 721N 722M 727D 737Q 738Y 739G 740S 741F 744Q 747R 768K 769Q 770M 771Y 772K 779F 835Q 836K 837F 839G 841T 843L 845P 846L 848T 851M 855Y 865T 866A 868W 871G 872A 876L 877Q 878I 879P 880F 882M 886Y 895Q 896N 899Y 900E 902Q 945V 948L 949S 957S 958V 960N 964S 965R 966L 967D(C) 987Q 1001R 1012S 1013E 1021R (identity: 98.7 %/88.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8h11_C_1 identity=88.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130
:**************************************** *****************************************************:
8h11_C_1 21:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 120
SecStr : EEEETT EE SS SSEEEEEEEE TTEEEEEE ------- EE SS EEEEEEESSS EEEEE SSSSSSS EEEEEE SS EEEEEEEE:
ExpBur :eebebbebbbbbeeeeebeeeeeebebebbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeeeebbebeeeeeeebbebbbb:
Contact : b bbb b
queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230
:**** ************ ***************************************************:
8h11_C_1 121:ELCDXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 220
SecStr : -------------------- EEEEEEEEEE ------------- EEEEEEEEEETTEEEEEEEEEE SSS EEEEEEEE E:
ExpBur :eeee--------------------eeeeeeeeeeee-------------eebbbbbbbeeeeebbbbebeeebeeeeebbeeeebbeeeeebebebebee:
Contact : bbb b bbb
queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330
:****** *********************************************************************************:
8h11_C_1 221:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 320
SecStr :EEEEE ------------- EEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHTSS SEEEEEEEEEB EEEE HHHHHS:
ExpBur :bebeee-------------ebbbbbbbeebebbbebeeeeebeebbbbebebbbbbbbeeeebebeebeeebeebebeeeeebbbbeeeeeebebeebbe:
Contact : bb
queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430
:*************************************** *********************************************************** :
8h11_C_1 321:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVCATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDX: 420
SecStr : S BGGG EEEEE SEE HHHHS S SEEEEESS GGGGGT BS EEEEEEEE GGGGGGSSSS SHHHHHT TT EEEEEEE S -:
ExpBur :eeebbbbebbeeeebeebebebbebeeeeebeeeebeebebeebbeebbbbbebbbbbbebebbebbbeeeeeebbbebbbbbeebebbbbbbebeeee-:
Contact : b
queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530
: ****************** ******* *****************************************:
8h11_C_1 421:XXXXXXXYKYRYLRHGKLRPFERDIXXXXXXXXXXXXXXXXXXXXXPLNDYGFXXXXXXGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 520
SecStr :------- EEE SS TT --------------------- EEE ------ EEEEEEEE SSSS EE S SSEEEEEET:
ExpBur :-------eebbeeeeeebeeeeeee---------------------eeeebee------eeebbbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebbbb:
queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630
:****************************************************************************************************:
8h11_C_1 521:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 620
SecStr :TEEEEEEEEE TT B TTS EEE TTT EEEEE EEEEEEEES TTT S EEEEES HHHHHHHHHTT BSS SS S EEE:
ExpBur :eeeeebebeeeeeebeeeeeebeeeeeeeebbbbeeeeebbebeebeebbbbbbbbbbeebeebbbbbeebebeebeebbeeeebebebeeeebeeeeee:
queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730
:******************************** ************************************************************:
8h11_C_1 621:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 720
SecStr : SSEEEES EE S SEEEETTEEEEEE -------- EEEEEE S SSEEEEEEEEEEEEEEEEEE EEEE HHHHHTTT HH:
ExpBur :beebbbbebeeeeeeeeeebebeeebbbbbee--------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee:
Contact : b bb b
queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830
:******************************************************************************** :
8h11_C_1 721:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXX: 820
SecStr :HHHHHGGG SSHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE GGGS SSSSSSS HHHHHHHHS --------------------:
ExpBur :beebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeeebebbbbbbeebee--------------------:
Contact : bbbbb b b bbbbb b
queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930
: *************************************************************************************************:
8h11_C_1 821:XXXAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 920
SecStr :--- TT EEEE SS HHHHHHHHHHHHHHHHHHTTTTTTSS HHHHHHHHHHHTT HHHHHTSHHHHHHHHHHHHHHHHHHTTS STTHHH:
ExpBur :---eeeebbeeeeeeeeeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebeeb:
Contact : bbb b b b bb b b b bb b bb bbbbb b b bb bb b
queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030
:************************************ ***************************************************************:
8h11_C_1 921:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLCKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1020
SecStr :HHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE:
ExpBur :eebbeebeebeeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbeebeeeebbbeeeb:
Contact : b bb bb b bbbb b b bb b
queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123
:*********************************************************************************************:
8h11_C_1 1021:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1113
SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEEESSSEEEE SS EEEEETTEEEEE BSTTEEE S TTS TT EE B :
ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbeeeebbbbeeeeebbbbbeebbeeeebbeeebeeeeeeeeeeeeeeeebeeee:
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[assembly_id:1]
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