Protein Model on 6cs1_C_1_A_1
(TEMPLATE: 
6cs1
)Protein Model on 6cs1_C_1_A_1
(TEMPLATE: 6cs1
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (A) | polymer(polypeptide(L)) [1066 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | A 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 304N 306R 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 554D 555V 557D 558F 559T 573I 574S 575P 578F 599Q 600D 632Q 651P 652I 653G 654A 655G 679M 681L 683A 684D 685S 686S 687I 688A 689Y 690S 691N 692N 693T 694I 695A 943T 950S 951N 952F 953G 977R 984Q 988T 995I 1021R 1022V 1023D 1024F 1027K 1029Y 1054E 1056N 1059T 1060A 1061P 1071F 1072P 1073R 1089R 1103F 1105S 1111V 1112I (identity: 100.0 %/96.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs1_C_1 identity=96.4% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs1_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : S EEE TT EE S S EEEEEEEE TT EEEEEE SS EE TT EEEEEEESS EEEEESS SSSS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebebebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs1_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SS EEEEEE EEEEEEEEEETTT SEEEEEEES S EEEE S SS EEEEEEEEEETTEEEEEEEEEE SSS EEE:
ExpBur :eebebebbebbbbebbebbbbbbbeeebeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbebeeebeeeeebeebeebbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs1_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :EEEEEE SEEEEEEEEEE --- SEEEE B EEEEEEEEE TTS EEEEEESSS HHHHHHHHHT SS SS EE EEE EEE :
ExpBur :eeeebebebebeebbbbbbbbee---ebbbbebbbbbbebeebebbbebeeebebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebbbee:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs1_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr : B TTTTSS S TTS EEEE SEE TTTSS SSBS EE --- GGGTS SS EEEEEEE STTSTT SSS TTHHHHHT B SSSE:
ExpBur :eeeeebebeebbebeebebbbbbeeeebeebbbbbeebeeeeebebeebe---bebeeebeeeebbbbbbbbbbebbeebbeeeeeebbbbbbebbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs1_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr :EEEEEEE TTTT BSS BTT EEE SS BT TTS TTSTT SEEE BBSSS GGG EEEEEEE ------ EE :
ExpBur :bbbbbbebeeebbeeebeeebebbeeeeeebeeeeebeeebebbeeeeebeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebebeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs1_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : TTS EEEE SS EEEEEEEE SS EEE SSSSEEEEB TTT BEEEE EE EEEE TTT S EEEEESS THHHHHHHHHT EES:
ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebebbbbbbbeeeeeebbbbbeebebeebeebbeeeebee:
Contact : bbb bbbbbbbb bbb bbb b bb
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************* **********************************************:
6cs1_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS TT EEE SSEEEESSEE SEEEETTEEEEEE --------- EEEEEE S SSEEEEEEEEEEEEEEEEEE EE:
ExpBur :ebeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:
Contact : b bbbbb b b bbbbbbbbbbbbb
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs1_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E HHHHHSSS HHHHHHHTTS SHHHHHHHHHHHHHHHHHHHHHHHSTT SS S EETTEE TTTS SSSTT HHHHHHHHT --------:
ExpBur :bebeebbbeebeebeeebeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebebbbbbeeeeeeebebbebbeeeee--------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** **************************************************************************************:
6cs1_C_1 805:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : B B -------- B SSSEEE SS HHHHHHHHHHHHHHHHHHGGGGTTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHH:
ExpBur :eebeee--------eeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs1_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHS SSS HHHHHHHHHHHHHHHHHHHGGG TTSS SSHHHHTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS:
ExpBur :eebeebeeebeebeebeeebeebbeebeeeeeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe:
Contact : b bbbb b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs1_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : STTTTSSSEEEEE EEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEE SSSEEEESSSSEEEE SSS EE STT EE SSSSSSS EEE :
ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebbbbeebbeeeeebbeeebeeeeebeeeeebeee:
Contact : bbbb b b b b bbb bbb b b b bb
queryA 1118:TVY:1120
:***:
6cs1_C_1 1105:TVY:1107
SecStr : :
ExpBur :ebe:
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[assembly_id:1]
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