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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1069 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 289S 304N 306R 342R 372T 376D 381N 399P 444R 445H 449R 450P 451F 452E 453R 455I 502E 535T 543K 544R 545F 546Q 548F 549Q 550Q 551F 552G 553R 554D 555V 557D 558F 573I 574S 575P 577S(A) 578F 600D 601V 630Q 631T 632Q 651P 652I 653G 654A 655G 656I 679M 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 691N 692N 693T 694I 695A 697P 939Q 943T 947Q 950S 951N 952F 953G 977R 984Q 988T 999E 1021R 1022V 1027K 1029Y 1054E 1061P 1071F 1072P 1073R 1076V 1089R 1090N 1103F 1105S 1111V (identity: 98.9 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crz_C_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crz_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S EEEESEEEEE SS S EEEEEEEE TTEEEEEEEE TT EE TT EEEEEEESS EEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeebeeeeeebbebbbbbbeeeeeeeeeeeeebbbbbbeeebebbbbeeebbbbeebebeebbbbbbbbebbbbbbbbbbeebeeeebbbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crz_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEE SS EEEE TTT EEEEE SEEEEEEEEEE S SSB EEEEEEEEEETTEEEEEEEEE BSSS EEEEE: ExpBur :bebebeebebbbbebbeebbbbbbeeebebeebebeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebebebebeebbeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crz_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEEE --- SEEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS SEEEE EEE EEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe: Contact : b b b queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************* ***********************************************: 6crz_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCXXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S B TTTTS S STT EEEEE SB SHHHHS SSBS B ---- THHHH BS EEEEEEEE STTTTTSSSS TTHHHHHT B SS : ExpBur :eebeeeebeebbebeebebbbebeeeebeebbbebebbeebeebeeeee----eebeeebeeeebebbbbbbbbebbeebeeeeeeebbbebbbbbeeeb: Contact : b b b b b queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crz_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEE TTTS BSS B S EEE SS BT B TTS TTSTT B SEEE BBSSS GGGS EEEEEEEE ------ B SS : ExpBur :bbbbbebbeeebbeeebbeeeebbeebeeebeeeeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbbe------ebbbebeee: Contact : bb bbbbb b b queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crz_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEEEEBTTB EEEEEE TT EE SSSS EEE TTT EEEEE EE EEEEES TTT S EEEEET HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbbeebeebbbbbeebebeebeebbeeebbee: Contact : b bbbb bbbbbbbb bb bbb bb bb queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 6crz_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE --------- EEEEEEE S SSEEEEE SEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebebbbbbebeebeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: Contact : bbb bbbbbb b bbbbbbbbbbbbbbb b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crz_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E SHHHHTSS HHHHHHHGGG SHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTS SS HHHHHHHHH --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeebeeeebebbebebbbbeeeeeeeebebbebbeeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :********* ***************************************************************************************: 6crz_C_1 805:QYGECLGDIXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B EE ---- EE SSSEEE SS HHHHHHHHHHHHHHHTTTTHHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeeeeee----eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crz_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH SSSHHHHHHHHHHHHHHHHHHHTTS TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebebeebeebeeeeeeeebeeebeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbb: Contact : b b b bbbb b b b b queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crz_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : SSSTTSSSEEEE B SSEEEEEEEEEEE EEEEEEESEEEETTEEEEESSSEEEE SS EEEE SSS B TTSEEEEEESSSSSSEE : ExpBur :bbeeeebbbebebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbebeeebbeeeeebbbeeeeeebbbeeebebeeebeeebbeeeeebeeeeeebee: Contact : bb b b b b bbb b bb b b b queryA 1118:TVY:1120 :***: 6crz_C_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |