Protein Model on 6acj_C_1_A_1
(TEMPLATE: 
6acj
)Protein Model on 6acj_C_1_A_1
(TEMPLATE: 6acj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 51T 110K 112Q 158N 191D 193F 218P 221K 223P 224L 225G 226I 227N 269N 722M 727D 737Q 738Y 739G 740S 741F 744Q 746N 747R 761R 768K 769Q 770M 771Y 772K 832I 833C 834A 835Q 836K 837F 838N 839G 844P 845P 846L 847L 848T 851M 855Y 865T 866A 868W 869T 871G 872A 875A 876L 877Q 878I 879P 882M 886Y 889N 893V 894T 895Q 896N 899Y 945V 949S 960N 963L 964S 965R 966L 967D 970E 987Q 1009T 1012S 1013E 1016L 1021R (identity: 100.0 %/95.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acj_C_1 identity=95.9% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acj_C_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEEE TT SS SS EEEEEE TT EEEEB TT EE S EEEEEEESS EEEESSSSSSSBEEEEE:
ExpBur :eebeeeeeeeeeeeebebeebbbbeebeeeeeeeeeeeeebbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebebebebbbbb:
Contact : b bbbb b b b
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acj_C_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEESB S SSS TT S EEEE S SS EEEEEEEEEETTEEEEEEB SSS S E:
ExpBur :beeebbbbebbbbeebebbbbebeeeebebeeeebeeeeeeeeeeeebeeeeeebeeeeeebebbbbbbbbeeeeebbbbebebebebeeebeebebbbe:
Contact : b b b
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acj_C_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE ---- S EEEEEE EEEEEEEEE SSSSEEEEEESSS HHHHHHHHHT SS SS EE BB EEEE :
ExpBur :eeeebeeeeebeebbebbbbbe----ebbbbebbbbbbebeebbbbbebbeebebeebbbbbbebbbbbebeeeeeebeebeeebeebebeeebebebee:
Contact :b b bbbbb b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:* ***********************************************************************************************:
6acj_C_1 318:NXXXXCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : ---- TTTTTSSSS STT EEEEE SEE SHHHHT TTSSEEEE SS SSS TTS BEEEEEEEEEE GGGTTTSSSS SHHHHT SS :
ExpBur :e----eebeebbeeeebebbbbbeeeebeebebebeebeeeeebebeebeeeebeebeeeebbbbebbbbbbebebbebbbeeeeeebbbebbebbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:*********************************************************************************************** *:
6acj_C_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGXXXXT: 517
SecStr : EEEEEE TTTS SS EEE SS TT B TT S TTSTT B SEEE TTS STTS EEEEEEEEE SSSS EE ---- :
ExpBur :bbbbbbbbeeebbeeeeeeebeebeeeeeebeebeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbbeeeeeebbbe----e:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acj_C_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : TTS EEEE SS EE EEE TT SSS EEE TTS EEEE B EEEE SSS EEEESS SHHHHHHHTTT BSS:
ExpBur :eeeeeebbebebeebeeebbbeebeeebeeeeeebeeeeeeeebbebbeeeebebeeebbeebbbbbbbbeeeeeebbbbbeebebeebeebbeeeebeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acj_C_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS EEE SSS EEES S SS BTTTB ------------- S SS B S EEEEEEEEEEE EE:
ExpBur :ebeeeeeeeebeebeebbbbebeeeeeeeeeebebeeebbbee-------------bbbbebbeeeeeeeeeeeeeeebbbebebebeebbbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acj_C_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr : TTTSS S SHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHTTT SS S STT BTTB TTSSSSS HHHHHHHTTS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbebeeebeee------:
Contact : b b bbbbb b bb b bbbbb
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acj_C_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TT EE SS HHHHHHHHHHHHHHHHSS S SSS SHHHHHHHTTTTT TTTTTTSHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeebeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
Contact : bbbbbbbb bbbbb b b bb bb bb bbbbb b b b bbbb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acj_C_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS SSSHHHHHHHHHHHHHHHHHHHHHHS SSSS SSTTTGGGG STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS:
ExpBur :eebeeeeeebbebeebbeebbeeeeebeeeeeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebeebbeebbbb:
Contact : b b b bbbbb b b b bb b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acj_C_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTSSSSSS EEEEEE SSEEEEEEEEEEE B SS SSSS SSS EETTTT EE SSS SSTTS TTS :
ExpBur :bbeeeebbeebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebeeeeeebeeebbeebeeeeeeebebee:
Contact : b
queryA 1118:TV:1119
:**:
6acj_C_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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