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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1053 aa] | Spike glycoprotein |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5x58_B_1 identity=96.7% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :*********************************************************** ****************************************: 5x58_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEE EEEEE SS S EEEEEEEE TT EEEEEEE SSB EE TT EEEEEEESS EEEESSSSSSS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbebeeeebeeeeeebebbbbbbebebbbbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 5x58_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SSEEEEEEEEE S BEEE TTT EEEE S S EEEEEEEEEEEE S SS EEEEEEEEEETTEEEEEEEE SSS EEEEE: ExpBur :beeebbbbbbbbbebbebbbbebeeeebeeeeeebeeeeeeeebeeebeeeebebeeeeeebeebbbbbbbeeeeebebbebeeebebeeebbeebbbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :********************** *************************************************************************: 5x58_B_1 205:PIFKLPLGINITNFRAILTAFSXXXXTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE EEEE B B ---- SEEEEEEE EEEEEEEE SSS EEEETTSSHHHHHHHHHT SS SEE B EEE : ExpBur :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebeeebebeebbbbbbebbbbbbbeeeebebeebeeebeebbebeeebebbeb: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :****************************************************************************************************: 5x58_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :SS EE GGGTTTT S STT EEEEE SEE STTTSS SEEEESSS SSTTTTS BS EEEEEEEE HHHHHHSSBS TTSSSTTTS B SSS : ExpBur :eeeeeebbeebbeeeebebbbbbeeeebeebbbebeebeeeeebeeeebbeeebeebeeebbbebebbbbbbbeebbebbbeeeeeeebbebbebbeeee: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :****************************************************************************************************: 5x58_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 504 SecStr : EEEEEE TTTT SS S B SS TT B SSS TTSTT B SB TTS GGGS EEEEEEE S SS B : ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeeeeeeeeeebbeeeeebeeeeeebeebbeebebebeeeeeebbbbbbbbbbeeeeeebbbbbeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :****************************************************************************************************: 5x58_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEE SS BEEEE TT EEESSSSSEEEEE TTT EEEEE B EEE TTT EEEE S SHHHHHHHTTT SS: ExpBur :eeeeebbbebbbbebeeebbbeeeeeebeeeebbbeeeeeebebbbbbeeeeebebeebbeeebbbbbbbbeebeeebbbbbebebeebeebeeeebbeb: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************* **********************************************: 5x58_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS S TT EESS EE S SEEEETTEEEE --------- EEEE S SSEEEEES B EEEEEEE B : ExpBur :ebeebeeeeeebeeeebbbbebeebeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbb: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 5x58_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr : HHHHHHSS SHHHHHHGGG SSSSSHHHHHHHHHHHHHHHHHHHHTT SS S BTTB S SSS SSSS HHHHHHHHS --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbeebeeeeeebeebebebbebebbbeeeebeeebbebbebbbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 : ***************************************************************************************: 5x58_B_1 805:XXXXXXXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr :------------- TT B SS HHHHHHHHHHHHHHHHHT SHHHHSS HHHHHHHHHHHHT THHHHHSHHHHHHHHHHHHHHHH: ExpBur :-------------eeeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeebeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :****************************************************************************************************: 5x58_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHHS SHHHHHHHHHHHHHHHHHHHHHTSS TTSS S HHHHHTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS: ExpBur :eebeeeeebeeebbebeeebeebbeebeeebeeeeebeeeebeebeeebeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1104 :***************************************************************************************: 5x58_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFV:1091 SecStr : STTTS SSSEEE EEEETTEEEEEEEE B EEEEEE SSB SSS BEESS EEETTEEEB TTS B STTEE : ExpBur :bbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebeebeeeeeebeeeeebbbbeeeeeebbbbebbebeeeeeeeebee: |