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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1007 aa] | Spike glycoprotein :SPIKE_SARS | |
2 | b | Z 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 318N 566K (identity: 100.0 %/91.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8h12_B_1 identity=91.9% |
queryA 31:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 130 :**************************************** *****************************************************: 8h12_B_1 17:TQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHXXXXXXXNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNF: 116 SecStr : EEEE S B SSS S EEEEEEEE TTEEEEEE ------- EE SS EEEEEEESS EEEEEEESSSSSSS EEE B SS B EE : ExpBur :eebebbebbbbbbeeeebeeeeeebeebbbbbebebebee-------eeebebeebbbbbbbbeeeebebbbbbbebeeeeebbbbeeeeeeebbebbbb: queryA 131:ELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 230 :** ************ ***************************************************: 8h12_B_1 117:ELXXXXXXXXXXXXXXXXXXXXXXNAFNCTFEYISDXXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITN: 216 SecStr : ---------------------- S B B ------------- EEEEEEEEEETTEEEEEEEEE S SS B EEEEEE E: ExpBur :ee----------------------eeeeeeeeeeee-------------ebbebbbbbeeeeebbbbebebebeeeeebeeeeeebeeeeebebebebee: queryA 231:FRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 330 :****** *********************************************************************************: 8h12_B_1 217:FRAILTXXXXXXXXXXXXXAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN: 316 SecStr :EEEEE ------------- EEEEEE EEEEEEEEE TTS EEEEEETTT HHHHHHHHHTSS SEEEE S EEEE S B HHHHSS: ExpBur :bebeee-------------ebbbbbebeebbbbbebeeebebeebbbbbbebbbbbbbeeeeeebeebeeebeeebbeeeeebbbbeebeeebebeebbe: Contact : b queryA 331:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 430 :********************************************************************* ******************************: 8h12_B_1 317:ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPCQTGVIADYNYKLPDDFMGCVLAWNTRNIDA: 416 SecStr : S GGG EEEEE SSB STTTTT SEEEEESS GGGSSS B S EEEEEEEE GGGGGGSSSS SSHHHHT TT EEEEEEE TTT : ExpBur :eeebbbbeebeeeebeebbbebeebeeebeeeeeebeebeeeebeebbbbbbebbbbbbbbebbebbbbeeeeebbbebbbbbeebebbbbbbebeeebb: queryA 431:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 530 :****************************************************************************************************: 8h12_B_1 417:TSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN: 516 SecStr : SS BTT EEE SS TT B TTS TTSTT B SEEE B SSS GGGS EEEEEEE SS B SS BEEEES: ExpBur :eeebbeebebbeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeeeeeeeebbbeeeeeeeeeeebbebbbb: queryA 531:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 630 :****************************************************************************************************: 8h12_B_1 517:GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQ: 616 SecStr :S B BEEEE TT EE SSS EEE TTT EEEEE SS S EEEEES TTT S EEEEET GGGHHHHHTGGGS TTTGGGTSSS EEE: ExpBur :eeeeebbbeeeeeebeeebbbbeeeeeebebbbbbeeeebbebeebeeeebbbbbbbeeeeeebbbbbeeeebeebeeebbbeebeebbeebbeeeeebe: Contact : b queryA 631:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 730 :******************************** ***********************************************************: 8h12_B_1 617:TQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE: 716 SecStr :ETTEEEES EE SS B SEEEETTEEEEEE --------- EEEEEEB S TT EEEEEEEEEEEEEEEEE EEEE HHHHHSTT HH: ExpBur :beebbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbebebeebbbeebee: queryA 731:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARD: 830 :****************************************************************************** : 8h12_B_1 717:CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVXXXXXXXXXXXXXXXXXXXXXX: 816 SecStr :HHHHHTTSTTSSHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTSS SSSS SS HHHHHHTS ----------------------: ExpBur :bbebbeeeeeebeebeeebeebbebbbebbeebbeebeeeeeeeeebebeebebeebbbeeeeeeeebebbebbbebe----------------------: queryA 831:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 930 :****************************************************************************************************: 8h12_B_1 817:LICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKL: 916 SecStr : HHHHHTTTEEEE SS HHHHHHHHHHHHHHHHHB SSSSSSS B HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHHHHHHH S TTHHH: ExpBur :eeeebeeebbeeeeeeeeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbebbeebbeebbeebeeeeeebeeb: queryA 931:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1030 :************************************** *************************************************************: 8h12_B_1 917:QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH:1016 SecStr :HHHHHHHHHHHHHHHHTTS TTSS S HHHHTTSS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTSSSSSEE: ExpBur :eebeeebeeebeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbbbbeeeebbbeeeb: queryA 1031:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1123 :*********************************************************************************************: 8h12_B_1 1017:LMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPL:1109 SecStr :EEEEEEEETTEEEEEEEEEEEEEEEEE S EESSS EEEESSSEEEE SS EEEE SSS B BSTTEEE S TTSSTT EE B : ExpBur :bbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbeeeeebebbbebbbeeeebbeeebeeeeeeeeeeeeeeeebeeee: |